allpy
annotate allpy/rna.py @ 481:b92cad794578
allpy/structure: remove Sequence.pdb_residues, add Monomer.pdb_residue
Information from aequence.pdb_residues[monomer] is
now available in monomer.pdb_residue
author | boris (netbook) <bnagaev@gmail.com> |
---|---|
date | Fri, 18 Feb 2011 18:48:37 +0300 |
parents | 5639138f619a |
children | 6e87dcc73d8b |
rev | line source |
---|---|
bnagaev@240 | 1 import base |
me@353 | 2 import data.codes |
me@281 | 3 |
dendik@382 | 4 import rna |
dendik@382 | 5 |
me@328 | 6 class Monomer(base.Monomer): |
me@328 | 7 """RNA monomers: nucleotides.""" |
me@328 | 8 type = 'rna' |
dendik@382 | 9 types = rna |
me@281 | 10 by_code1 = {} |
me@281 | 11 by_code3 = {} |
me@281 | 12 by_name = {} |
me@353 | 13 Monomer._initialize(data.codes.rna) |
bnagaev@240 | 14 |
bnagaev@240 | 15 class Sequence(base.Sequence): |
dendik@382 | 16 types = rna |
bnagaev@240 | 17 |
me@341 | 18 class Block(Alignment, base.Block): |
me@341 | 19 pass |
me@341 | 20 |
dendik@379 | 21 class Alignment(base.Alignment): |
dendik@382 | 22 types = rna |
dendik@379 | 23 |
me@281 | 24 # vim: set ts=4 sts=4 sw=4 et: |