allpy
annotate README.devel @ 816:d137df18a8bf
structure: create method superimpose of SequenceMixin
Most of code of AlignmentMixin.superimpose was moved to SequenceMixin.
Structures of sequences can be superimposed manually (in custom order,
or with additions action such as loading/unloading of structure).
| author | boris (kodomo) <bnagaev@gmail.com> |
|---|---|
| date | Fri, 15 Jul 2011 02:06:23 +0400 |
| parents | b87eb91bd929 |
| children |
| rev | line source |
|---|---|
| dendik@604 | 1 Using library in-place |
| dendik@604 | 2 ====================== |
| dendik@604 | 3 |
| me@338 | 4 To use the library in-place, without installing, you have to add it's |
| me@338 | 5 directory to PYTHONPATH. |
| me@338 | 6 |
| dendik@604 | 7 e.g, type this in your shell:: |
| me@338 | 8 |
| dendik@604 | 9 export PYTHONPATH=`pwd` |
| me@344 | 10 |
| dendik@604 | 11 alternatively, you can type:: |
| me@344 | 12 |
| me@344 | 13 . ./SETPATH |
| me@344 | 14 |
| me@344 | 15 which adds the right path to PYTHONPATH and also adds 'utils' directory |
| dendik@604 | 16 to PATH. |
| dendik@604 | 17 |
| dendik@604 | 18 NEWS file |
| dendik@604 | 19 ========= |
| dendik@604 | 20 |
| dendik@604 | 21 NEWS file contains news that are important to the library users, not to the |
| dendik@604 | 22 devels. It must contain a word abot every change in any interfaces. It may |
| dendik@604 | 23 contain a word about bugfix, if that bugfix was important and could cause users |
| dendik@604 | 24 some grief. It must not contain anything else. |
| dendik@604 | 25 |
| dendik@605 | 26 The file grows upwards (like blog, so that all the most important things are at |
| dendik@605 | 27 the top, like) |
| dendik@605 | 28 |
| dendik@604 | 29 Example file format:: |
| dendik@604 | 30 |
| dendik@605 | 31 1.3.1 (2011-05-01) |
| dendik@605 | 32 * bugfix: the Moon was going to fall |
| dendik@605 | 33 |
| dendik@604 | 34 1.3.0 (2011-04-15) |
| dendik@604 | 35 |
| dendik@604 | 36 * new: new feature description |
| dendik@604 | 37 * new: new feature description |
| dendik@604 | 38 * change(!): critical library interface change |
| dendik@604 | 39 * change: change in the library interface |
| dendik@604 | 40 * bugfix: short bug summary, see #ticket |
| dendik@604 | 41 * bugfix: important bug that could destroy the Earth but did not hit trac |
| dendik@604 | 42 |