allpy
annotate allpy/dna.py @ 341:f6ae2c7f3be6
Implemented dummy Alignment and Block for dna and rna
| author | Daniil Alexeyevsky <me.dendik@gmail.com> |
|---|---|
| date | Wed, 19 Jan 2011 16:26:27 +0300 |
| parents | e3bcb9f8d7b0 |
| children | 085ddef0152a |
| rev | line source |
|---|---|
| bnagaev@240 | 1 import base |
| me@280 | 2 |
| me@328 | 3 class Monomer(base.Monomer): |
| me@328 | 4 """DNA monomers: nucleotides.""" |
| me@328 | 5 type = 'dna' |
| me@280 | 6 by_code1 = {} |
| me@280 | 7 by_code3 = {} |
| me@280 | 8 by_name = {} |
| me@328 | 9 Monomer._initialize() |
| bnagaev@240 | 10 |
| bnagaev@240 | 11 class Sequence(base.Sequence): |
| bnagaev@240 | 12 pass |
| bnagaev@240 | 13 |
| me@341 | 14 class Alignment(base.Alignment): |
| me@341 | 15 sequence_type = Sequence |
| me@341 | 16 |
| me@341 | 17 class Block(Alignment, base.Block): |
| me@341 | 18 pass |
| me@341 | 19 |
| me@280 | 20 # vim: set ts=4 sts=4 sw=4 et: |