allpy
annotate test/test.py @ 99:ffc102ed0249
lib::save_fasta ugly bug fixed
| author | boris <bnagaev@gmail.com> |
|---|---|
| date | Wed, 20 Oct 2010 23:38:21 +0400 |
| parents | 3d40d7b9a123 |
| children | b43daeb9d767 |
| rev | line source |
|---|---|
| bnagaev@98 | 1 import sys |
| bnagaev@83 | 2 |
| bnagaev@83 | 3 from allpy.lib.project import Project |
| bnagaev@83 | 4 |
| bnagaev@99 | 5 p = Project(open('test.fasta')) |
| bnagaev@83 | 6 print "alignment length: %i" % len(p) |
| bnagaev@95 | 7 print "sequence `: %s" % str(p.sequences[0]) |
| bnagaev@83 | 8 |
| bnagaev@98 | 9 #~ p.sequences[0].pdb_chain_add(open('1jcc.pdb'), '1jcc', 'A') |
| bnagaev@98 | 10 p.muscle_align() |
| bnagaev@98 | 11 p.save_fasta(sys.stdout) |