allpy
annotate NEWS @ 993:0d39f47c619d
pair_cores: revert try-catch in main(), removed accidentally in ce4ccbd2a1c2
| author | Boris Nagaev <bnagaev@gmail.com> |
|---|---|
| date | Sat, 03 Mar 2012 15:45:13 +0400 |
| parents | b8f1c216bca8 |
| children | 818263bbcd1a |
| rev | line source |
|---|---|
| bnagaev@992 | 1 * new: add an argument not to save downloaded pdb (CachedDownloadPdb) |
| bnagaev@992 | 2 * new: Geometrical core improvement: ignore cores, owned by one SS element |
| bnagaev@992 | 3 * new: allow to load custom pdbs (allpy.structure) |
| bnagaev@992 | 4 * new: add pymol superimposition feature draft (allpy.structure) |
| bnagaev@992 | 5 |
| bnagaev@991 | 6 * new: add features of blocks3d.py to pair_cores.py |
| bnagaev@991 | 7 * new: add ``parts'' argument to blocks3d() (allpy.structure) |
| bnagaev@991 | 8 * new: add method blocks_from_homology() (allpy.structure) |
| bnagaev@991 | 9 * new: add MonomerHomology-based high blocks building algo to pair-cores |
| bnagaev@991 | 10 * new: print default values of command line args in help message (pair_cores) |
| bnagaev@991 | 11 |
| dendik@848 | 12 1.4.1 |
| dendik@848 | 13 |
| dendik@848 | 14 This is a code cleanup release. |
| dendik@848 | 15 Nothing should change in the interface or behaviour at all. |
| dendik@848 | 16 |
| dendik@848 | 17 1.4.0 (2011-07-20) |
| dendik@624 | 18 |
| dendik@697 | 19 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki |
| dendik@717 | 20 * new: File format 'markup' for storing alignment with arbitrary markups |
| dendik@633 | 21 * new: processor allpy.processors.Needle() |
| dendik@633 | 22 * new: method allpy.base.Alignment.rows_as_strings() |
| dendik@650 | 23 * new: method allpy.base.Alignment.row_as_list(sequence) |
| dendik@650 | 24 * new: method allpy.base.Alignment.row_as_string(sequence) |
| dendik@657 | 25 * new: columns_as_lists() returns list of lists, each has 'column' attribute |
| dendik@662 | 26 * new: javascript viewer colors columns by conservedness |
| dendik@624 | 27 |
| dendik@602 | 28 1.3.0 (2011-04-15) |
| dendik@602 | 29 |
| dendik@602 | 30 * new: started NEWS file |
| dendik@602 | 31 * new: started tracking version numbers |