allpy
annotate NEWS @ 715:2c3bd08e1f1d
pair_cores: add required option for output file with classes of homology
* method blocks_to_homology() of structure.AlignmentMixin was used (see #58)
* other output files are now optional
* command line option -y corresponds output homology file
| author | boris <bnagaev@gmail.com> |
|---|---|
| date | Fri, 08 Jul 2011 00:23:51 +0200 |
| parents | 7999f8756c77 |
| children | 0377cd9ac4e6 |
| rev | line source |
|---|---|
| dendik@624 | 1 1.3.1 |
| dendik@624 | 2 |
| dendik@697 | 3 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki |
| dendik@633 | 4 * new: processor allpy.processors.Needle() |
| dendik@633 | 5 * new: method allpy.base.Alignment.rows_as_strings() |
| dendik@650 | 6 * new: method allpy.base.Alignment.row_as_list(sequence) |
| dendik@650 | 7 * new: method allpy.base.Alignment.row_as_string(sequence) |
| dendik@657 | 8 * new: columns_as_lists() returns list of lists, each has 'column' attribute |
| dendik@662 | 9 * new: javascript viewer colors columns by conservedness |
| dendik@624 | 10 |
| dendik@602 | 11 1.3.0 (2011-04-15) |
| dendik@602 | 12 |
| dendik@602 | 13 * new: started NEWS file |
| dendik@602 | 14 * new: started tracking version numbers |