allpy
annotate test/test.py @ 120:5e7851709c95
lib::block geometrical_core completed, not tested
| author | boris <bnagaev@gmail.com> |
|---|---|
| date | Sat, 23 Oct 2010 22:45:35 +0400 |
| parents | b43daeb9d767 |
| children | 0903179f8c34 |
| rev | line source |
|---|---|
| bnagaev@98 | 1 import sys |
| bnagaev@83 | 2 |
| bnagaev@83 | 3 from allpy.lib.project import Project |
| bnagaev@83 | 4 |
| bnagaev@120 | 5 p = Project(open('1jcc_in.fasta')) |
| bnagaev@83 | 6 print "alignment length: %i" % len(p) |
| bnagaev@110 | 7 print "sequence: %s" % str(p.sequences[0]) |
| bnagaev@83 | 8 |
| bnagaev@120 | 9 p.sequences[0].pdb_chain_add(open('1jcc.pdb'), '1jcc', 'B') |
| bnagaev@120 | 10 p.sequences[1].pdb_chain_add(open('1kfm.pdb'), '1kfm', 'A') |
| bnagaev@120 | 11 |
| bnagaev@110 | 12 #~ p.muscle_align() |
| bnagaev@110 | 13 #~ p.save_fasta(sys.stdout) |