Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/hg/allpy/annotate/835efa2a8c71/NEWS
Дата изменения: Unknown
Дата индексирования: Tue Feb 26 10:16:27 2013
Кодировка:
allpy: NEWS annotate

allpy

annotate NEWS @ 817:835efa2a8c71

optimization of rasmol_homology: keep structure loaded of two sequences only One of steps of this program is superimposition of all sequences with main sequence and saving of all structures to pdb file. Loaded structure of all sequences is not needed to do this. At every moment only structure of main sequence and of superimposing sequence. This optimization results in essential memory saving. Output files should be the same to previous revision. To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. So some code is same as code of methods of alignment. Note: behaves as before, with superimpose and save_pdb methods of alignment. Model was returned by these methods but never used while generating spt script. This can result in collisions of rasmol selections when number of sequences is greater than max number of chains of one model.
author boris (kodomo) <bnagaev@gmail.com>
date Fri, 15 Jul 2011 02:23:27 +0400
parents dcb78a91e981
children da46b25fd67d
rev   line source
dendik@624 1 1.3.1
dendik@624 2
dendik@697 3 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki
dendik@717 4 * new: File format 'markup' for storing alignment with arbitrary markups
dendik@633 5 * new: processor allpy.processors.Needle()
dendik@633 6 * new: method allpy.base.Alignment.rows_as_strings()
dendik@650 7 * new: method allpy.base.Alignment.row_as_list(sequence)
dendik@650 8 * new: method allpy.base.Alignment.row_as_string(sequence)
dendik@657 9 * new: columns_as_lists() returns list of lists, each has 'column' attribute
dendik@662 10 * new: javascript viewer colors columns by conservedness
dendik@624 11
dendik@602 12 1.3.0 (2011-04-15)
dendik@602 13
dendik@602 14 * new: started NEWS file
dendik@602 15 * new: started tracking version numbers