1.1 --- a/allpy/pdb.py	Wed Feb 02 15:50:20 2011 +0300
     1.2 +++ b/allpy/pdb.py	Wed Feb 02 16:21:04 2011 +0300
     1.3 @@ -210,7 +210,7 @@
     1.4          for clique in cliques:
     1.5              for GC in GCs:
     1.6                  new_nodes = clique - GC
     1.7 -                if len(new) < ac_new_atoms * len(clique):
     1.8 +                if len(new_nodes) < ac_new_atoms * len(clique):
     1.9                      break
    1.10              else:
    1.11                  GCs.append(clique)