1.1 --- a/allpy/base.py	Wed Dec 15 20:06:27 2010 +0300
     1.2 +++ b/allpy/base.py	Wed Dec 15 20:10:03 2010 +0300
     1.3 @@ -169,25 +169,6 @@
     1.4          monomers = [monomer(letter) for letter in string]
     1.5          return cls(monomers, name, description)
     1.6  
     1.7 -    @classmethod
     1.8 -    def file_slice(cls, file, n_from, n_to, fasta_name='', name='', description=''):
     1.9 -        """ Build and return sequence, consisting of part of sequence from file
    1.10 -
    1.11 -        Does not control gaps
    1.12 -        """
    1.13 -        inside = False
    1.14 -        number_used = 0
    1.15 -        s = ''
    1.16 -        for line in file:
    1.17 -            line = line.split()
    1.18 -            if not inside:
    1.19 -                if line.startswith('>%s' % fasta_name):
    1.20 -                    inside = True
    1.21 -            else:
    1.22 -                n = len(line)
    1.23 -                s += line[(n_from - number_user):(n_to - number_user)]
    1.24 -        return cls.from_string(s, name, description)
    1.25 -
    1.26  class Alignment(dict):
    1.27      """ Alignment
    1.28