view test/test.py @ 316:3a34b934435f
Added allpy.base.Sequence.__hash__: sequences are hashed by identity
author |
Daniil Alexeyevsky <me.dendik@gmail.com> |
date |
Thu, 16 Dec 2010 23:45:57 +0300 |
parents |
fb3164f03984 |
children |
faa7e19bffd9 |
line source
3 from allpy.alignment import Alignment
4 from allpy.block import Block
6 p = Alignment(open('test.fasta'))
7 print "alignment length: %i" % len(p)
8 print "sequence: %s" % str(p.sequences[0])
10 p.sequences[0].pdb_chain_add(open('1jcc.pdb'), '1jcc', 'B')
11 p.sequences[1].pdb_chain_add(open('1kfm.pdb'), '1kfm', 'A')
14 GCs = b.geometrical_cores(ac_new_atoms=0.00, ac_count=-1)
15 b.save_fasta(sys.stdout)
16 for i, GC in enumerate(GCs):
17 GC.save_xstring(sys.stdout, i)
20 #~ p.save_fasta(sys.stdout)