view NEWS @ 992:230aaa440351
update NEWS with old changes
I am not sure that this list is the entire list
| author |
Boris Nagaev <bnagaev@gmail.com> |
| date |
Fri, 02 Mar 2012 10:12:27 +0400 |
| parents |
b8f1c216bca8 |
| children |
818263bbcd1a |
line source
1 * new: add an argument not to save downloaded pdb (CachedDownloadPdb)
2 * new: Geometrical core improvement: ignore cores, owned by one SS element
3 * new: allow to load custom pdbs (allpy.structure)
4 * new: add pymol superimposition feature draft (allpy.structure)
6 * new: add features of blocks3d.py to pair_cores.py
7 * new: add ``
parts'' argument to blocks3d() (allpy.structure)
8 * new: add method blocks_from_homology() (allpy.structure)
9 * new: add MonomerHomology-based high blocks building algo to pair-cores
10 * new: print default values of command line args in help message (pair_cores)
14 This is a code cleanup release.
15 Nothing should change in the interface or behaviour at all.
19 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki
20 * new: File format 'markup' for storing alignment with arbitrary markups
21 * new: processor allpy.processors.Needle()
22 * new: method allpy.base.Alignment.rows_as_strings()
23 * new: method allpy.base.Alignment.row_as_list(sequence)
24 * new: method allpy.base.Alignment.row_as_string(sequence)
25 * new: columns_as_lists() returns list of lists, each has 'column' attribute
26 * new: javascript viewer colors columns by conservedness
30 * new: started NEWS file
31 * new: started tracking version numbers
