view NEWS @ 715:2c3bd08e1f1d
pair_cores: add required option for output file with classes of homology
* method blocks_to_homology() of structure.AlignmentMixin was used (see #58)
* other output files are now optional
* command line option -y corresponds output homology file
| author |
boris <bnagaev@gmail.com> |
| date |
Fri, 08 Jul 2011 00:23:51 +0200 |
| parents |
7999f8756c77 |
| children |
0377cd9ac4e6 |
line source
3 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki
4 * new: processor allpy.processors.Needle()
5 * new: method allpy.base.Alignment.rows_as_strings()
6 * new: method allpy.base.Alignment.row_as_list(sequence)
7 * new: method allpy.base.Alignment.row_as_string(sequence)
8 * new: columns_as_lists() returns list of lists, each has 'column' attribute
9 * new: javascript viewer colors columns by conservedness
13 * new: started NEWS file
14 * new: started tracking version numbers
