view allpy/config.py @ 592:2f851b66a2c7
structure.py: fix set_pdb_chain()
use "is" for monomers instead of Sequence.index
(due to different monomers could be ==)
| author |
boris (kodomo) <bnagaev@gmail.com> |
| date |
Sat, 26 Mar 2011 02:18:36 +0300 |
| parents |
7a72febf12f6 |
| children |
71910cefe37a |
line source
1 delta = 2.0 # for geometrical core building
2 minsize = 20 # min size of returning cores
3 maxabsent = 0.15 # deprecated?
5 # defaults for set_pdb_chain
6 min_continuous_match = 5
12 # pdb download url (XXXX is pdb code place)
13 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb'
14 pdb_path = '/tmp/%s.pdb'
15 timeout = 10 # time in sec. for BRON-KERBOSH algorithm
18 # min part or new atoms in new alternative core
21 # max number of cores (including main core)
26 timeout_2 = 10 # bron-kerbosh for blocks
