allpy: 5e7851709c95 test/test.py

allpy

lib::block geometrical_core completed, not tested

line source

1 import sys

3 from allpy.lib.project import Project

5 p = Project(open('1jcc_in.fasta'))

6 print "alignment length: %i" % len(p)

7 print "sequence: %s" % str(p.sequences[0])

9 p.sequences[0].pdb_chain_add(open('1jcc.pdb'), '1jcc', 'B')

10 p.sequences[1].pdb_chain_add(open('1kfm.pdb'), '1kfm', 'A')

12 #~ p.muscle_align()

13 #~ p.save_fasta(sys.stdout)