allpy: 6134ae1dfdae .hgeol

allpy

view .hgeol @ 896:6134ae1dfdae

fix error caused by applying secondary structure markup This bug should be digged. For some reason BioPython's DSSP failed to get secondary structure information of a residue: $ ./pair_cores/pair_cores.py -i test/aln1.fasta -y aaa -e True ... ('A', (' ', 51, ' ')) caused by dssp.__getitem__

author	Boris Nagaev <bnagaev@gmail.com>
date	Fri, 23 Sep 2011 14:10:25 +0400
parents	61e5d8e146c7
children

line source

1 [patterns]

2 **.py = native

3 **.txt = native

4 **.html = native

5 **.css = native

6 **.js = native

7 **.fasta = native

8 **.rst = native

9 **.tcl = native

10 **.C = native

11 **.h = native

12 utils/** = native

13 debian/** = native

14 Makefile = native

15 **/Makefile = native

16 README* = native

17 **/README* = native

18 TODO = native

19 **/TODO = native

20 NEWS = native

21 **/NEWS = native

22 .hgignore = native

24 **.png = BIN

26 # XXX: all executable scripts without extensions must end up in utils/

27 # this exception must go away

28 geometrical_core/geometrical-core = native

30 # XXX: these are all parts of Boris' build system for

31 # blocks3d-wt and must go away in favour of a Makefile

32 **.sh = native

33 **.xml = native

34 **.pro = native

35 **.ini = native