view NEWS @ 1099:71e60ae2cd1a
Check, whether alignment_index_markup was already created in blocks_finder.
| author |
Boris Burkov <BurkovBA@gmail.com> |
| date |
Tue, 05 Jun 2012 15:22:43 +0400 |
| parents |
818263bbcd1a |
| children |
|
line source
1 * new: Geometrical core improvement: ignore cores, owned by one SS element
3 * new: add features of blocks3d.py to pair_cores.py
4 * new: add MonomerHomology-based high blocks building algo to pair-cores
5 * new: print default values of command line args in help message (pair_cores)
6 * new: add web interface for pair-cores
10 This is a code cleanup release.
11 Nothing should change in the interface or behaviour at all.
15 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki
16 * new: File format 'markup' for storing alignment with arbitrary markups
17 * new: processor allpy.processors.Needle()
18 * new: method allpy.base.Alignment.rows_as_strings()
19 * new: method allpy.base.Alignment.row_as_list(sequence)
20 * new: method allpy.base.Alignment.row_as_string(sequence)
21 * new: columns_as_lists() returns list of lists, each has 'column' attribute
22 * new: javascript viewer colors columns by conservedness
26 * new: started NEWS file
27 * new: started tracking version numbers
