allpy
view README.devel @ 784:78597d31d423
refactoring of pair_cores.py
* add pdb-markup reading (user can provide pdb markup or alignment)
* add CachedDownloadPdb as pdb_getter and allow change chache_dir
* drop useless removing of monomers without structure
(it should be already done by previous steps)
* add messages to exceptions and documentation
* rename run() to homology_from_3d()
* hardening: raise if a structure at least one of sequences can't be loaded
see #86
It seems not to work with markups (returns no blocks)
| author | boris (kodomo) <bnagaev@gmail.com> |
|---|---|
| date | Tue, 12 Jul 2011 23:57:18 +0400 |
| parents | b87eb91bd929 |
| children |
line source
1 Using library in-place
2 ======================
4 To use the library in-place, without installing, you have to add it's
5 directory to PYTHONPATH.
7 e.g, type this in your shell::
9 export PYTHONPATH=`pwd`
11 alternatively, you can type::
13 . ./SETPATH
15 which adds the right path to PYTHONPATH and also adds 'utils' directory
16 to PATH.
18 NEWS file
19 =========
21 NEWS file contains news that are important to the library users, not to the
22 devels. It must contain a word abot every change in any interfaces. It may
23 contain a word about bugfix, if that bugfix was important and could cause users
24 some grief. It must not contain anything else.
26 The file grows upwards (like blog, so that all the most important things are at
27 the top, like)
29 Example file format::
31 1.3.1 (2011-05-01)
32 * bugfix: the Moon was going to fall
34 1.3.0 (2011-04-15)
36 * new: new feature description
37 * new: new feature description
38 * change(!): critical library interface change
39 * change: change in the library interface
40 * bugfix: short bug summary, see #ticket
41 * bugfix: important bug that could destroy the Earth but did not hit trac