allpy: 80043822a41e Makefile

allpy

view Makefile @ 704:80043822a41e

Added fileio.File.read_alignment and fileio.File.write_alignment [closes #57] This is now the recommended interface. In the following commits this interface will be used to write markup together with alignment. Previously, fileio received the alignment torn-apart into sequence representations as strings with gaps, sequence names and descriptions. Now, fileio tears the alignment apart by itself.

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Thu, 07 Jul 2011 19:21:12 +0400
parents	b291f9c34b49
children	101a23cd98ac

line source

1 components_cif_gz_url = \

2 ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/monomers/components.cif.gz

3 codes_py = allpy/data/codes.py

4 components_cif = allpy/data/components.cif

6 all: doc codes tests

8 tests:

9 PYTHONPATH=$(PWD) nosetests --with-coverage

11 doc:

12 sphinx-autopackage --suffix=rst --dest-dir=docs/source/allpy/ allpy

13 $(MAKE) -C docs html

15 force-doc:

16 rm docs/source/allpy/*

17 rm -rf docs/build

18 $(MAKE) doc

20 codes: $(codes_py)

22 force-codes:

23 rm $(codes_py)

24 $(MAKE) codes

26 $(codes_py): $(components_cif)

27 python allpy/data/mkcodes.py -i $< -o $@

29 $(components_cif):

30 wget -O - $(components_cif_gz_url) | zcat > $@