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Дата индексирования: Sun Feb 3 06:10:26 2013
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allpy: 835efa2a8c71 .hgeol

allpy

view .hgeol @ 817:835efa2a8c71

optimization of rasmol_homology: keep structure loaded of two sequences only One of steps of this program is superimposition of all sequences with main sequence and saving of all structures to pdb file. Loaded structure of all sequences is not needed to do this. At every moment only structure of main sequence and of superimposing sequence. This optimization results in essential memory saving. Output files should be the same to previous revision. To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. So some code is same as code of methods of alignment. Note: behaves as before, with superimpose and save_pdb methods of alignment. Model was returned by these methods but never used while generating spt script. This can result in collisions of rasmol selections when number of sequences is greater than max number of chains of one model.
author boris (kodomo) <bnagaev@gmail.com>
date Fri, 15 Jul 2011 02:23:27 +0400
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children c15e35bb3bca
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1 [patterns]
2 **.py = native
3 **.txt = native
4 **.html = native
5 **.css = native
6 **.js = native
7 **.fasta = native
8 **.rst = native
9 **.tcl = native
10 **.C = native
11 **.h = native
12 debian/** = native
13 Makefile = native
14 README* = native
15 NEWS = native