allpy
view test/usecase2.py @ 506:936463fb68b2
fixed blocks3d()
* fix bug in continuous_blocks
it joined short batches to next batch
* blocks3d(): put monomers only of boundary columns
to the graph.
* reduce size of wide cliques
* optimization
this needs better solution
* corrected conversion clique -> blocks (result)
* fixed self-intersection of result blocks
(filled_columns)
* fixed infinite loop
* added temponary exclusion of shortest sequence
* sorting of cliques by height and by width
author | boris (kodomo) <bnagaev@gmail.com> |
---|---|
date | Wed, 23 Feb 2011 18:13:56 +0300 |
parents | 0411fa851bba |
children | cc1959669928 |
line source
1 # Fragments are in pair_repeat.fasta
7 """Helper to mark column (given as dict) by identity."""
18 """Helper to mark column of 2 sequences (given as list) by identity."""
26 """Fund long positive runs.
28 This obscure and probably broken function has nothing to do with allpy,
29 so it's presence in the example is unnecessary.
30 """
39 continue
54 continue