allpy: b520e79fd1f4 NEWS

allpy

blocks3d-wt: add an example of an alignment for input for the program

author	Boris Nagaev <bnagaev@gmail.com>
date	Thu, 15 Dec 2011 12:31:07 +0300
parents	da46b25fd67d
children	b8f1c216bca8

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3 This is a code cleanup release.

4 Nothing should change in the interface or behaviour at all.

6 1.4.0 (2011-07-20)

8 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki

9 * new: File format 'markup' for storing alignment with arbitrary markups

10 * new: processor allpy.processors.Needle()

11 * new: method allpy.base.Alignment.rows_as_strings()

12 * new: method allpy.base.Alignment.row_as_list(sequence)

13 * new: method allpy.base.Alignment.row_as_string(sequence)

14 * new: columns_as_lists() returns list of lists, each has 'column' attribute

15 * new: javascript viewer colors columns by conservedness

17 1.3.0 (2011-04-15)

19 * new: started NEWS file

20 * new: started tracking version numbers