allpy: d3a85d02f252 allpy/dna.py

allpy

view allpy/dna.py @ 503:d3a85d02f252

structure.py: fix bugs * clique should be converted into set from frozenset before be passed to add_surrounded_columns() add_surrounded_columns() may change clique (add columns) * graph.vertices should be set, not list

author	boris (netbook) <bnagaev@gmail.com>
date	Tue, 22 Feb 2011 23:00:34 +0300
parents	5639138f619a
children	5f9e9c4e9ed6 e461a5529338

line source

1 import base

2 import data.codes

4 import dna

6 class Monomer(base.Monomer):

7 """DNA monomers: nucleotides."""

8 type = 'dna'

9 types = dna

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.dna)

15 class Sequence(base.Sequence):

16 types = dna

18 class Alignment(base.Alignment):

19 types = dna

21 class Block(Alignment, base.Block):

22 pass

24 # vim: set ts=4 sts=4 sw=4 et: