allpy: d9a3e99ae19b allpy/rna.py

allpy

view allpy/rna.py @ 666:d9a3e99ae19b

blocks3d/www: mark conservative columns inside blocks Previously letters were marked if column is conservative over all sequences of alignment. Currently it was changed to conservatism over block including this letter. Additional attribute storing conservatism of columns inside block was added to block. This caused all colors of blocks to be changed.

author	boris <bnagaev@gmail.com>
date	Fri, 01 Jul 2011 03:21:08 +0400
parents	df571a5233fb
children	4a9b4503a027

line source

1 import base

2 import data.codes

4 import rna

6 class Monomer(base.Monomer):

7 """RNA monomers: nucleotides."""

8 type = 'rna'

9 types = rna

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.rna)

15 class Sequence(base.Sequence):

16 types = rna

18 class Alignment(base.Alignment):

19 types = rna

21 class Block(Alignment, base.Block):

22 pass

24 # vim: set ts=4 sts=4 sw=4 et: