allpy: e83572fff43f allpy/config.py

allpy

view allpy/config.py @ 746:e83572fff43f

Roll-back a bug introduces by dirty hand-merge in [723]. (closes #74) (see #76) Boris! Please do not do dirty hand merges! If you did hg fetch here, this bug would not appear! Please, be extremely careful when you do hand merges and double-check your changes. Do a diff with each parent and see what you remove related to the parent! If someone else's code is involved in the merge (which is almost always the case), do that diff twice just to make sure you have not missed anything!

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Mon, 11 Jul 2011 14:29:54 +0400
parents	52f311cae778 a89409bb4653
children	3cc7ef543da5

line source

1 delta = 2.0 # for geometrical core building

2 minsize = 20 # min size of returning cores

3 maxabsent = 0.15 # deprecated?

5 # defaults for set_pdb_chain

6 min_continuous_match = 5

7 min_match = 20

8 max_waste_in_pdb = 5

10 min_core_size = 10

12 # pdb download url (XXXX is pdb code place)

13 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb'

14 pdb_path = '/tmp/%s.pdb'

15 timeout = 10 # time in sec. for BRON-KERBOSH algorithm

18 # min part or new atoms in new alternative core

19 ac_new_atoms = 0.5

21 # max number of cores (including main core)

22 ac_count = 5

24 # blocks3d

25 min_width = 4

26 timeout_2 = 10 # bron-kerbosh for blocks