allpy: e83572fff43f allpy/dna.py

allpy

view allpy/dna.py @ 746:e83572fff43f

Roll-back a bug introduces by dirty hand-merge in [723]. (closes #74) (see #76) Boris! Please do not do dirty hand merges! If you did hg fetch here, this bug would not appear! Please, be extremely careful when you do hand merges and double-check your changes. Do a diff with each parent and see what you remove related to the parent! If someone else's code is involved in the merge (which is almost always the case), do that diff twice just to make sure you have not missed anything!

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Mon, 11 Jul 2011 14:29:54 +0400
parents	5639138f619a
children	5f9e9c4e9ed6 e461a5529338

line source

1 import base

2 import data.codes

4 import dna

6 class Monomer(base.Monomer):

7 """DNA monomers: nucleotides."""

8 type = 'dna'

9 types = dna

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.dna)

15 class Sequence(base.Sequence):

16 types = dna

18 class Alignment(base.Alignment):

19 types = dna

21 class Block(Alignment, base.Block):

22 pass

24 # vim: set ts=4 sts=4 sw=4 et: