allpy: f634a7d3943f allpy/protein.py

allpy

Added utils/pool, a helper to run a large queue of small tasks in parallel

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Wed, 13 Jul 2011 20:30:45 +0400
parents	387f692e2356
children	4a9b4503a027

line source

1 import base

2 import data.codes

4 import protein

6 class Monomer(base.Monomer):

7 """Protein monomers: aminoacids."""

8 type = 'protein'

9 types = protein

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.protein)

15 class Protein(list):

16 """User defined protein; list of protein_sequences."""

17 pass

19 class Sequence(base.Sequence):

20 types = protein

22 class Alignment(base.Alignment):

23 types = protein

25 class Block(Alignment, base.Block):

26 pass

28 # vim: set ts=4 sts=4 sw=4 et: