| age |
author |
description |
| Fri, 25 May 2012 20:53:18 +0400 |
Daniil Alexeyevsky |
Hidded the misbehaved not-to-be-released-publically SequenceSecondaryStructureMarkup class into allpy.structure to postpone the problem of introducing the proper secondary structure markup to after the release while not breaking the added functionality of blocks3d; please note, this is a very dirty hack |
| Mon, 19 Mar 2012 13:52:56 +0400 |
Boris Nagaev |
Merged utils, pair_cores, blocks3d and geometrical-core from 9ae23 into 1.4.21.4.2 |
| Fri, 16 Mar 2012 16:45:00 +0400 |
Daniil Alexeyevsky |
Merged allpy & tests from 1.4.0 into 1.4.21.4.2 |
| Tue, 06 Mar 2012 22:38:54 +0400 |
Boris Nagaev |
SequenceSecondaryStructureMarkup: note that old dssp program must be used |
| Tue, 06 Mar 2012 20:29:34 +0400 |
Daniil Alexeyevsky |
Added generic alignment & sequence markup classes for atomic types: int, str, char, float, bool -- and tests for them (see #94,#55) |
| Sat, 25 Feb 2012 20:31:42 +0400 |
Daniil Alexeyevsky |
Added note to ss markup that it is going to be eliminated soon |
| Wed, 15 Feb 2012 16:37:23 +0400 |
Daniil Alexeyevsky |
Added SequenceCharMarkup to use with user-generated one-letter markups that can be saved to fasta later (see utils/markup_to_file.py) |
| Wed, 09 Nov 2011 00:49:25 +0300 |
Daniil Alexeyevsky |
Added internal support for new file format: FastQ |
| Tue, 11 Oct 2011 17:21:44 +0400 |
Daniil Alexeyevsky |
MarkupIOMixin: added attribute quotes to allow quotation around markup serialized string; fixed implementation of SequenceCaseMarkup based on that; [closes #125] |
| Fri, 23 Sep 2011 14:10:25 +0400 |
Boris Nagaev |
fix error caused by applying secondary structure markup |
| Sun, 18 Sep 2011 15:08:40 +0400 |
Boris Nagaev |
add secondary structure markup for sequence |
| Wed, 20 Jul 2011 20:44:59 +0400 |
Daniil Alexeyevsky |
Added allpy.markups.MarkupIOMixin to simplify new saveable markups creation. Switched existing saveable makrups to using it. Tested. (closes #82) |
| Fri, 15 Jul 2011 19:06:47 +0400 |
Daniil Alexeyevsky |
Enhanced allpy.base.Markup.sorted_values: it now accepts `map` and `default` arugments. Somewhat tested. (closes #67) |
| Fri, 15 Jul 2011 18:01:31 +0400 |
Daniil Alexeyevsky |
allpy.fileio. markup filetype now allows either - or _ to be used in headers interchangeably [closes #89] |
| Fri, 15 Jul 2011 16:43:03 +0400 |
Daniil Alexeyevsky |
Implemented & tested new markup API. See #95 |
| Fri, 15 Jul 2011 13:57:56 +0400 |
Daniil Alexeyevsky |
Added markups.by_name dictionary and markups.update() function to fill it. |
| Thu, 14 Jul 2011 16:15:21 +0400 |
Daniil Alexeyevsky |
Moved SequencePdbResiMarkup to allpy.markups, since it is used frequently |
| Mon, 11 Jul 2011 14:32:06 +0400 |
Daniil Alexeyevsky |
Added the ability to save/load SequenceCaseMarkup. (see #76) |
| Thu, 07 Jul 2011 22:32:21 +0400 |
Daniil Alexeyevsky |
Implemented markup fileIO (closes #56) |
| Tue, 05 Jul 2011 18:30:42 +0400 |
Daniil Alexeyevsky |
Implemented SequenceCaseMarkup along with the required changes to Monomer. |
| Fri, 01 Jul 2011 15:46:32 +0400 |
Daniil Alexeyevsky |
Added module markups with sample *Index and *Number markups |
