allpy
changeset 788:41e3bc6d6075
pair_cores: use pdb_getter when loading from markup
| author | boris (kodomo) <bnagaev@gmail.com> |
|---|---|
| date | Wed, 13 Jul 2011 01:47:32 +0400 |
| parents | 7c7359827510 |
| children | 40ae4a1a49df 92fe1fad259d |
| files | pair_cores/pair_cores.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line diff
1.1 --- a/pair_cores/pair_cores.py Wed Jul 13 01:42:25 2011 +0400 1.2 +++ b/pair_cores/pair_cores.py Wed Jul 13 01:47:32 2011 +0400 1.3 @@ -56,7 +56,7 @@ 1.4 for sequence in copy(alignment.sequences): 1.5 try: 1.6 if markup_file: 1.7 - sequence.markups['pdb_resi'].add_pdb() 1.8 + sequence.markups['pdb_resi'].add_pdb(download_pdb=pdb_getter) 1.9 else: 1.10 sequence.auto_pdb(xyz_only=True, pdb_getter=pdb_getter) 1.11 except: