allpy
changeset 1022:7fcb6f20898b
pair-cores: fix program fault if no high blocks were found
Provide initial value for reduce() function.
close #145
| author | Boris Nagaev <bnagaev@gmail.com> |
|---|---|
| date | Wed, 14 Mar 2012 17:54:01 +0400 |
| parents | 2c8820abb367 |
| children | 4732047ae426 |
| files | pair_cores/pair_cores.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line diff
1.1 --- a/pair_cores/pair_cores.py Sun Mar 11 16:22:53 2012 +0400 1.2 +++ b/pair_cores/pair_cores.py Wed Mar 14 17:54:01 2012 +0400 1.3 @@ -92,7 +92,7 @@ 1.4 high_blocks = block.blocks_from_homology(homology, min_width=min_width) 1.5 high_blocks = reduce(lambda a,b:a+b, 1.6 (pre_block.continuous_blocks(min_width) 1.7 - for pre_block in high_blocks)) 1.8 + for pre_block in high_blocks), []) 1.9 high_blocks = [b for b in high_blocks if len(b.sequences) >= 2] 1.10 if out_high_blocks_file: 1.11 block.blocks_to_file(out_high_blocks_file, high_blocks)