allpy

changeset 777:0d1ba84a4080
allpy/structure: replace deprecated process() method with realign() close #84
author: boris (kodomo) <bnagaev@gmail.com>
date: Tue, 12 Jul 2011 21:14:58 +0400
parents: 9f4a4357ee61
children: 9e0e0fb4908c
files: allpy/structure.py
diffstat: 1 files changed, 1 insertions(+), 1 deletions(-) [+]
[-]

allpy/structure.py 2 allpy/structure.py 2
allpy/structure.py 2
     1.1 --- a/allpy/structure.py	Tue Jul 12 20:12:14 2011 +0400
     1.2 +++ b/allpy/structure.py	Tue Jul 12 21:14:58 2011 +0400
     1.3 @@ -137,7 +137,7 @@
     1.4          a = Alignment()
     1.5          a.append_sequence(self)
     1.6          a.append_sequence(pdb_sequence)
     1.7 -        a.process(processors.Muscle())
     1.8 +        a.realign(processors.Muscle())
     1.9          Block = self.types.Block
    1.10          matches = Block.from_alignment(a, columns=[])
    1.11          for column in a.columns: