| age |
author |
description |
| Wed, 30 May 2012 12:43:09 +0400 |
Daniil Alexeyevsky |
allpy.base: Added decency verification function to alignments (closes #98) |
| Wed, 30 May 2012 12:33:22 +0400 |
Daniil Alexeyevsky |
Changed FASTA-file parser to accept files with empty lines before the first record (fixes #144) |
| Fri, 25 May 2012 21:12:54 +0400 |
Daniil Alexeyevsky |
(closes #153) |
| Fri, 25 May 2012 21:03:57 +0400 |
Daniil Alexeyevsky |
Marked the new release date as today in debian/changelog & NEWS |
| Fri, 25 May 2012 20:59:16 +0400 |
Daniil Alexeyevsky |
Documented the changes since 1.4.0 in NEWS |
| Fri, 25 May 2012 20:53:18 +0400 |
Daniil Alexeyevsky |
Hidded the misbehaved not-to-be-released-publically SequenceSecondaryStructureMarkup class into allpy.structure to postpone the problem of introducing the proper secondary structure markup to after the release while not breaking the added functionality of blocks3d; please note, this is a very dirty hack |
| Fri, 25 May 2012 20:28:00 +0400 |
Daniil Alexeyevsky |
Replaced allpy.util.Binder with functools.partial everywhere (functools.partial is 2.5-compatible) |
| Fri, 25 May 2012 20:12:23 +0400 |
Daniil Alexeyevsky |
Automated merge |
| Fri, 25 May 2012 20:09:45 +0400 |
Daniil Alexeyevsky |
Removed obsolete allpy.markup module (see #99) |
| Thu, 17 May 2012 02:04:41 +0400 |
Boris Nagaev |
pair-cores/web: change font of State and Count-up to make them noticeable |
| Thu, 17 May 2012 02:02:33 +0400 |
Boris Nagaev |
pair-cores/web: Alignment is now required input field |
| Thu, 17 May 2012 01:49:47 +0400 |
Boris Nagaev |
pair-cores: exit with status 255 on fail |
| Thu, 17 May 2012 01:41:55 +0400 |
Boris Nagaev |
pair-cores/web: run the program with option '--no-read-local' |
| Thu, 17 May 2012 01:37:11 +0400 |
Boris Nagaev |
geometrical-core: add option '--no-read-local' |
| Thu, 17 May 2012 01:32:26 +0400 |
Boris Nagaev |
pair-cores: add option '--no-read-local' |
| Thu, 17 May 2012 01:31:26 +0400 |
Boris Nagaev |
structure: add parameter 'read_local' to auto_pdb() |
| Wed, 16 May 2012 23:33:24 +0400 |
Boris Nagaev |
pair-cores/web: change size of alignment textarea to 12x60 |
| Wed, 16 May 2012 23:27:22 +0400 |
Boris Nagaev |
pair-cores/web: remove "Markup" input |
| Wed, 16 May 2012 23:21:30 +0400 |
Boris Nagaev |
pair-cores/web: add field "Execution log" |
| Wed, 16 May 2012 23:20:28 +0400 |
Boris Nagaev |
pair-cores/web: upgrade wt-classes to 1.4.0 |
| Thu, 05 Apr 2012 19:29:24 +0400 |
Daniil Alexeyevsky |
Fixed a typo (NameError) introduced in [d3605c58a377] |
| Thu, 05 Apr 2012 19:27:32 +0400 |
Daniil Alexeyevsky |
Alignment._remove_gap_columns worked incorrectly on blocks (only removed columns that were globally empty in alignment) |
| Thu, 05 Apr 2012 19:25:16 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Thu, 05 Apr 2012 19:25:11 +0400 |
Daniil Alexeyevsky |
Fixed: Block._append_columns added columns twice if .columns is .alignment.columns |
| Tue, 03 Apr 2012 12:31:05 +0400 |
Boris Nagaev |
allpy/graph: fix doctest (debug on) |
| Tue, 03 Apr 2012 12:25:56 +0400 |
Boris Nagaev |
Merge fix of typo in algorithm name Bron?Kerbosch from default into 1.4.21.4.2 |
| Tue, 03 Apr 2012 12:20:13 +0400 |
Boris Nagaev |
fix a typo in algorithm name Bron?Kerbosch in allpy library |
| Tue, 03 Apr 2012 12:06:26 +0400 |
Boris Nagaev |
fix a typo in algorithm name Bron?Kerbosch in program helps |
| Tue, 03 Apr 2012 12:02:57 +0400 |
Boris Nagaev |
fix a typo in algorithm name Bron?Kerbosch in web ui |
| Mon, 26 Mar 2012 22:09:09 +0400 |
Boris Burkov |
Automated merge with ssh://kodomo.fbb.msu.ru/allpy1.4.2 |
| Mon, 26 Mar 2012 22:08:08 +0400 |
Boris Burkov |
Changes in blocks_finder transferred from default to 1.4.2.1.4.2 |
| Sun, 25 Mar 2012 22:54:35 +0400 |
Boris Nagaev |
allpy: do not print debugging messages, unless allpy.config.debug |
| Sun, 25 Mar 2012 21:51:52 +0400 |
Boris Nagaev |
patch_structure: patch allpy.graph not to print "Start ... algorithm"1.4.2 |
| Sun, 25 Mar 2012 21:41:26 +0400 |
Boris Nagaev |
patch_structure: patch allpy.structure not to print "Downloading..."1.4.2 |
| Sun, 25 Mar 2012 21:17:04 +0400 |
Boris Nagaev |
patch_structure: patch case_homology not to print markup type to output1.4.2 |
| Fri, 23 Mar 2012 16:52:31 +0400 |
Boris Burkov |
Automated merge with ssh://kodomo.fbb.msu.ru/allpy |
| Fri, 23 Mar 2012 16:51:54 +0400 |
Boris Burkov |
optparse added to blocks_finder |
| Tue, 20 Mar 2012 22:08:55 +0400 |
Boris Burkov |
blocks_finder back to 1.4.0 and contains compatibility crutches |
| Fri, 23 Mar 2012 01:34:48 +0400 |
Boris Nagaev |
Merge per-block columns highlight and translations from default into 1.4.21.4.2 |
| Fri, 23 Mar 2012 01:27:40 +0400 |
Boris Nagaev |
HTML viewer of blocks: fix per-block conservative columns highlight |
| Tue, 20 Mar 2012 18:29:00 +0400 |
Boris Nagaev |
pair-cores/web: clarify pymol output for pair cores |
| Tue, 20 Mar 2012 01:39:28 +0400 |
Boris Nagaev |
Merge pair-cores new option for pymol high blocks from default into 1.4.21.4.2 |
| Mon, 19 Mar 2012 15:22:32 +0400 |
Boris Nagaev |
pair-cores: add a patch upgrading allpy.structure1.4.2 |
| Mon, 19 Mar 2012 13:52:56 +0400 |
Boris Nagaev |
Merged utils, pair_cores, blocks3d and geometrical-core from 9ae23 into 1.4.21.4.2 |
| Mon, 19 Mar 2012 23:23:40 +0400 |
Boris Nagaev |
pair-cores/web: add option to output high blocks in pymol |
| Mon, 19 Mar 2012 22:56:16 +0400 |
Boris Nagaev |
pair-cores: add option to output high blocks in pymol |
| Fri, 16 Mar 2012 23:43:28 +0400 |
Boris Nagaev |
blocks_to_pymol(): orient visible (cosmetic improvement) |
| Fri, 16 Mar 2012 23:41:59 +0400 |
Boris Nagaev |
blocks_to_pymol(): take alter code into account while fitting |
| Fri, 16 Mar 2012 16:45:00 +0400 |
Daniil Alexeyevsky |
Merged allpy & tests from 1.4.0 into 1.4.21.4.2 |
| Fri, 16 Mar 2012 16:06:18 +0400 |
Boris Nagaev |
blocks_to_pymol(): add pymol command by_block |
| Fri, 16 Mar 2012 15:07:14 +0400 |
Boris Nagaev |
blocks_to_pymol(): add selections for blocks |
| Fri, 16 Mar 2012 00:54:26 +0400 |
Boris Nagaev |
blocks_to_pymol(): fix the order of pair_fit arguments |
| Fri, 16 Mar 2012 00:20:00 +0400 |
Boris Nagaev |
blocks_to_pymol(): hide atoms, absent in the alignment |
| Fri, 16 Mar 2012 00:10:42 +0400 |
Boris Nagaev |
blocks_to_pymol(): show blocks with cartoon, other with transparent sticks |
| Thu, 15 Mar 2012 23:17:23 +0400 |
Boris Nagaev |
blocks_to_pymol(): use all blocks, not only the first one |
| Thu, 15 Mar 2012 23:07:25 +0400 |
Boris Nagaev |
blocks_to_pymol(): hide all except involved chains, represented as cartoon |
| Thu, 15 Mar 2012 19:50:25 +0400 |
Boris Nagaev |
allpy/structure.py: cosmetic improvements of blocks_to_pymol()'s implementation |
| Thu, 15 Mar 2012 19:47:56 +0400 |
Boris Nagaev |
allpy/structure.py: cosmetic improvements of blocks_to_pymol()'s implementation |
| Wed, 14 Mar 2012 17:54:01 +0400 |
Boris Nagaev |
pair-cores: fix program fault if no high blocks were found |
| Sun, 11 Mar 2012 16:22:53 +0400 |
Boris Nagaev |
pair-cores/web: true order of libs and objects for linker |
