Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/hg/allpy/shortlog/49582a92418a
Дата изменения: Unknown
Дата индексирования: Tue Oct 2 09:40:31 2012
Кодировка:
allpy: log

allpy

log

age author description
Sat, 26 Mar 2011 02:16:01 +0300 boris (kodomo) fix default values of set_pdb_chain() parameters
Sat, 26 Mar 2011 01:24:21 +0300 boris (kodomo) structure.py: add join parameter to pair_cores_parts()
Sat, 26 Mar 2011 01:15:35 +0300 boris (kodomo) fix syntax error
Sat, 26 Mar 2011 01:13:56 +0300 boris (kodomo) structure.py: add min_core_size parameter to pair_core_parts()
Sat, 26 Mar 2011 01:09:05 +0300 boris (kodomo) structure.py: fix add_surrounded_columns()
Sat, 26 Mar 2011 00:42:07 +0300 Daniil Alexeyevsky Probably fixed fileio.EmbossFile.write_strings error in unlink
Sat, 26 Mar 2011 00:34:30 +0300 boris (kodomo) structure.py: improve set_pdb_chain()
Sat, 26 Mar 2011 00:18:15 +0300 Daniil Alexeyevsky Typo in allpy.fileio.write_strings
Sat, 26 Mar 2011 00:15:56 +0300 Daniil Alexeyevsky Fixed alignment output: don't use 'write_string', since in only works for fasta
Fri, 25 Mar 2011 23:12:21 +0300 boris (kodomo) structure.py: opportunity not to store entire pdb info, xyz only
Fri, 25 Mar 2011 23:09:58 +0300 boris (kodomo) Automated merge with ssh://kodomo/allpy
Thu, 17 Mar 2011 17:48:37 +0300 boris (kodomo) fix previous commit
Thu, 17 Mar 2011 17:03:27 +0300 boris (kodomo) structure: set_pdb_chain() allows 2 mutations in pdb sequence
Thu, 24 Mar 2011 21:21:11 +0300 Daniil Alexeyevsky Merge in favour of rewritten fileio
Thu, 24 Mar 2011 21:15:48 +0300 Daniil Alexeyevsky Added test/test_usecases to use usecase examples as unit tests
Thu, 24 Mar 2011 21:13:54 +0300 Daniil Alexeyevsky Clean and simple rewrite of usecase3
Thu, 24 Mar 2011 21:10:12 +0300 Daniil Alexeyevsky Bug in base.Alignment.remove_gap_columns (reversed(enumerate(...)) is surprisingly illegal python construct)
Thu, 24 Mar 2011 20:46:06 +0300 Daniil Alexeyevsky Clean rewrite of fileio
Thu, 24 Mar 2011 20:45:32 +0300 Daniil Alexeyevsky Don't import fileio in blocks3d, since it's not used there
Thu, 24 Mar 2011 20:43:23 +0300 Daniil Alexeyevsky usecase1: write test file to stdout to ease testing and litter less
Thu, 24 Mar 2011 20:36:19 +0300 Daniil Alexeyevsky Fixed usecase1 to use realign instead of process
Thu, 24 Mar 2011 20:22:46 +0300 boris (kodomo) fix bug in continuous_blocks()
Thu, 17 Mar 2011 16:56:48 +0300 boris (kodomo) processors: add no_gaps parameter to Muscle processor
Thu, 17 Mar 2011 11:41:15 +0300 boris (kodomo) backout (incorrect commit)
Thu, 17 Mar 2011 11:39:58 +0300 boris (kodomo) fileio: fix export to msf
Thu, 17 Mar 2011 11:26:53 +0300 boris (kodomo) fileio: fix export to msf
Wed, 16 Mar 2011 22:50:50 +0300 boris (kodomo) structure: fix bug in set_pdb_chain()
Wed, 16 Mar 2011 22:36:48 +0300 boris (kodomo) fix a bug
Wed, 16 Mar 2011 22:31:24 +0300 boris (kodomo) minor fix: use column2pos method
Wed, 16 Mar 2011 22:26:42 +0300 boris (kodomo) move generation of html to method of structure.BlockMixin
Wed, 16 Mar 2011 22:15:19 +0300 boris (kodomo) fix blocks_to_file()
Wed, 16 Mar 2011 22:04:58 +0300 boris (kodomo) add methods to save and load list of blocks from file
Wed, 16 Mar 2011 21:34:06 +0300 boris (kodomo) structure: move column2pos to separate function
Wed, 16 Mar 2011 20:09:19 +0300 boris (kodomo) structure: pick out pair_core_parts()
Wed, 16 Mar 2011 19:59:52 +0300 boris (kodomo) structure.py: fixes
Wed, 16 Mar 2011 19:50:06 +0300 boris (kodomo) documentation cleanup
Wed, 16 Mar 2011 19:45:56 +0300 boris (kodomo) gpaph: fix connected_components()
Wed, 16 Mar 2011 19:42:58 +0300 boris (kodomo) graph: improve expand_to_max_clique()
Wed, 09 Mar 2011 17:10:44 +0300 boris (kodomo) merge
Fri, 04 Mar 2011 15:16:28 +0300 boris (kodomo) structure.py: separate pdb-loading from auto_pdb
Fri, 04 Mar 2011 21:20:44 +0300 Daniil Alexeyevsky Automated merge with ssh://kodomo/allpy
Mon, 28 Feb 2011 22:40:16 +0300 Daniil Alexeyevsky allpy.processors: make temporary files named
Tue, 01 Mar 2011 00:17:13 +0300 boris Automated merge with ssh://kodomo/allpy
Mon, 28 Feb 2011 16:19:06 +0300 boris blocks3s/wt: improve explanations (translations)
Mon, 28 Feb 2011 16:14:27 +0300 boris code cleanup
Mon, 28 Feb 2011 16:11:20 +0300 boris kill blocks3d process in widget destructor
Mon, 28 Feb 2011 13:27:31 +0300 boris blocks3d/wt: remove useless includes from header file
Mon, 28 Feb 2011 22:20:59 +0300 Daniil Alexeyevsky Moved freqs.py to utils, since it is not a test
Mon, 28 Feb 2011 22:18:49 +0300 Daniil Alexeyevsky Removed some obsolete broken tests
Mon, 28 Feb 2011 22:12:56 +0300 Daniil Alexeyevsky Makefile: renamed target test to tests to implicitly make it PHONY
Mon, 28 Feb 2011 22:06:34 +0300 Daniil Alexeyevsky Run of make force-doc: updated autogenerated sphinx docs
Mon, 28 Feb 2011 22:06:03 +0300 Daniil Alexeyevsky Makefile: added rules "tests" and "doc" for running tests and rebuilding documentation
Mon, 28 Feb 2011 21:36:15 +0300 Daniil Alexeyevsky codes.py, mkcodes: Added codes B, Z. Uniformly uppercased all entries. (Fixes #34)
Mon, 28 Feb 2011 21:34:38 +0300 Daniil Alexeyevsky test_base: Removed tests for private interfaces (which changed)
Mon, 28 Feb 2011 21:17:41 +0300 Daniil Alexeyevsky Reimplemented flush(direction) as processor1.2.0
Mon, 28 Feb 2011 19:24:28 +0300 Daniil Alexeyevsky mkcodes.py, codes.py: remove entries with 1-letter code longer than 1 letter
Mon, 28 Feb 2011 19:19:34 +0300 Daniil Alexeyevsky Added .hgignore rules to ignore files and directories named temp and temp.* anywhere
Mon, 28 Feb 2011 19:17:07 +0300 Daniil Alexeyevsky Added Makefile to automate building of codes.py
Mon, 28 Feb 2011 19:15:31 +0300 Daniil Alexeyevsky Updated allpy/data/codes.py from fresh components.cif
Mon, 28 Feb 2011 19:14:48 +0300 Daniil Alexeyevsky mkcodes.py: add vim modeline to the output