| age |
author |
description |
| Mon, 28 Feb 2011 19:15:31 +0300 |
Daniil Alexeyevsky |
Updated allpy/data/codes.py from fresh components.cif |
| Mon, 28 Feb 2011 19:14:48 +0300 |
Daniil Alexeyevsky |
mkcodes.py: add vim modeline to the output |
| Mon, 28 Feb 2011 19:11:23 +0300 |
Daniil Alexeyevsky |
Clean rewrite of mkcodes.py (helper script for allpy/data) |
| Mon, 28 Feb 2011 15:16:27 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Sat, 26 Feb 2011 18:59:48 +0300 |
Daniil Alexeyevsky |
Chaned sequence name format in extract_pfam.py to ">PDBID_PDBCHAIN ORIGINAL_NAME ORIGINAL_DESCRIPTION LIST_OF_ASSOCIATED_PDB_FRAGMENTS" |
| Sat, 26 Feb 2011 18:52:23 +0300 |
Daniil Alexeyevsky |
Added util extract_pfam |
| Sun, 27 Feb 2011 23:49:54 +0300 |
boris (kodomo) |
structure: fix bug add_surrounded_columns() |
| Sat, 26 Feb 2011 21:02:21 +0300 |
boris |
blocks3d/wt: default timeout2=-1 (unlimited) |
| Sat, 26 Feb 2011 20:59:43 +0300 |
boris |
blocks3d/wt: add Reset button |
| Sat, 26 Feb 2011 20:57:27 +0300 |
boris |
blocks3d/wt: fix segmentation fault |
| Sat, 26 Feb 2011 20:42:16 +0300 |
boris |
blocks3d/wt: fix script for debugging |
| Sat, 26 Feb 2011 19:26:13 +0300 |
boris (kodomo) |
blocks3d/wt: store all tempfiles from history |
| Sat, 26 Feb 2011 18:06:45 +0300 |
boris (kodomo) |
blocks3d(): fix a bug |
| Sat, 26 Feb 2011 18:05:10 +0300 |
boris (kodomo) |
blocks3d(): add primary_cliques parameter |
| Fri, 25 Feb 2011 18:00:20 +0300 |
boris (kodomo) |
structure: code cleanup |
| Thu, 24 Feb 2011 23:51:52 +0300 |
boris (kodomo) |
graph.py: refactoring |
| Thu, 24 Feb 2011 17:37:28 +0300 |
boris (kodomo) |
graph.py: optimization |
| Thu, 24 Feb 2011 11:26:47 +0300 |
boris (kodomo) |
structure: fix regular expression for pdb_id_parse |
| Wed, 23 Feb 2011 23:10:47 +0300 |
boris (kodomo) |
blocks3d(): fix a bug |
| Wed, 23 Feb 2011 22:16:02 +0300 |
boris (kodomo) |
geometrical_core(): fix a bug |
| Wed, 23 Feb 2011 22:13:50 +0300 |
boris (kodomo) |
structure.py: fix model in regular expression |
| Wed, 23 Feb 2011 20:18:15 +0300 |
boris (kodomo) |
fix add_surrounded_columns() |
| Wed, 23 Feb 2011 20:05:14 +0300 |
boris (kodomo) |
geometrical_core(): fix a bug |
| Wed, 23 Feb 2011 19:52:59 +0300 |
boris (kodomo) |
geometrical_core: add sequences before gcs when export to fasta or msf |
| Wed, 23 Feb 2011 19:52:04 +0300 |
boris (kodomo) |
export to msf: fix bugs |
| Wed, 23 Feb 2011 19:11:40 +0300 |
boris (kodomo) |
geometrical-core: fix extra requirement |
| Wed, 23 Feb 2011 18:31:41 +0300 |
boris (netbook) |
blocks3d(): fix |
| Wed, 23 Feb 2011 18:13:56 +0300 |
boris (kodomo) |
fixed blocks3d() |
| Wed, 23 Feb 2011 12:08:47 +0300 |
boris |
blocks3d.py: improvements |
| Wed, 23 Feb 2011 12:02:58 +0300 |
boris |
graph.py: do not start bron-kerbosh algorithm if timeout=0 |
| Tue, 22 Feb 2011 23:00:34 +0300 |
boris (netbook) |
structure.py: fix bugs |
| Tue, 22 Feb 2011 19:25:27 +0300 |
boris (netbook) |
Automated merge with ssh://kodomo.fbb.msu.ru/allpy |
| Tue, 22 Feb 2011 19:22:45 +0300 |
boris (netbook) |
blocks3d/blocks3d.py: program was reimplemented |
| Tue, 22 Feb 2011 19:18:03 +0300 |
boris (netbook) |
allpy/structure: fix bugs |
| Tue, 22 Feb 2011 19:12:36 +0300 |
boris (netbook) |
move argparse_validators.py to allpy (#33) |
| Tue, 22 Feb 2011 19:10:24 +0300 |
boris (netbook) |
protein_pdb: fix bugs |
| Tue, 22 Feb 2011 19:00:12 +0300 |
boris (netbook) |
copy protein_pdb module to blocks3d project |
| Tue, 22 Feb 2011 18:58:46 +0300 |
boris (netbook) |
protein_pdb: improvements |
| Tue, 22 Feb 2011 18:41:31 +0300 |
boris (netbook) |
blocks/www: add explanation |
| Tue, 22 Feb 2011 17:16:56 +0300 |
Daniil Alexeyevsky |
blocks3d-wt: reorganized apache configs for more stable operation |
| Tue, 22 Feb 2011 10:37:48 +0300 |
boris (netbook) |
blocks3d(): fix a bug |
| Tue, 22 Feb 2011 10:35:58 +0300 |
boris (netbook) |
blocks3d(): return continuous blocks |
| Mon, 21 Feb 2011 17:53:04 +0300 |
boris (netbook) |
allpy/structure: add blocks3d method to BlockMixin |
| Mon, 21 Feb 2011 14:30:22 +0300 |
boris (netbook) |
geometrical_core refactoring |
| Mon, 21 Feb 2011 00:02:27 +0300 |
boris (netbook) |
blocks3d/www: move to rest2web site-build system |
| Sun, 20 Feb 2011 22:19:16 +0300 |
Daniil Alexeyevsky |
blocks3d-wt debianization: fixed urls for various resources (js & css) |
| Sun, 20 Feb 2011 21:19:53 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Sun, 20 Feb 2011 20:47:50 +0300 |
Daniil Alexeyevsky |
Debianized blocks3d, blocks3d-wt; fixed debian dependencies for python-allpy where necessary |
| Sun, 20 Feb 2011 21:05:03 +0300 |
boris |
blocks3d/wt: fix paths problems |
| Fri, 18 Feb 2011 19:04:43 +0300 |
boris (netbook) |
geomatrical_cores(): fix a bug with infinity cores |
| Fri, 18 Feb 2011 18:59:44 +0300 |
boris (netbook) |
geometrical_core: fix and improve options help |
| Fri, 18 Feb 2011 18:58:30 +0300 |
boris (netbook) |
geometrical_cores(): use alternative cores count information |
| Fri, 18 Feb 2011 18:48:37 +0300 |
boris (netbook) |
allpy/structure: remove Sequence.pdb_residues, add Monomer.pdb_residue |
| Fri, 18 Feb 2011 16:23:54 +0300 |
boris (netbook) |
blocks3d/wt: fix tempfile name |
| Fri, 18 Feb 2011 16:09:12 +0300 |
boris (netbook) |
geometrical-core: save model id when export to spt |
| Fri, 18 Feb 2011 15:49:54 +0300 |
boris (netbook) |
geometrical-core: add spt output |
| Fri, 18 Feb 2011 13:50:12 +0300 |
boris (netbook) |
structure: save_pdb() recovers old chain and model values |
| Fri, 18 Feb 2011 13:35:29 +0300 |
boris (netbook) |
structure: assign new chain (A,B,...) names when export |
| Fri, 18 Feb 2011 13:15:50 +0300 |
boris (netbook) |
pdb: fix superimposing and saving |
| Fri, 18 Feb 2011 01:03:21 +0300 |
boris |
pdb: export to pdb |
