Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~element/Term3/gomolog.txt Дата изменения: Tue Dec 18 18:46:16 2007 Дата индексирования: Mon Oct 1 21:00:43 2012 Кодировка:

BLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= M10743 M10743.1 E.coli pyrBI operon promoter-regulatory region
including leader peptide and 5' end of pyrB gene coding for the
catalytic subunit of aspartate transcarbamoylase (ATCase).
(162 letters)

Database: fg
884 sequences; 12,243,887 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section... 147 9e-36

>AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section 213 of
220 of the complete genome.
Length = 20095

Score = 147 bits (74), Expect = 9e-36
Identities = 137/158 (86%)
Strand = Plus / Minus


Query: 1 atggctaatccgctatatcagaaacatatcatttccataaacgaccttagtcgcgatgac 60
|||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct: 10035 atggctaacccgctatatcaaaaacatatcatttccataaacgacctcagccgcgacgat 9976


Query: 61 cttaatctggtgctggcgacagcggcgaaactgaaagcaaacccgcaaccagagctgttg 120
||||||||||| |||||||| ||||||||| | ||||| |||||||| || ||||| |||
Sbjct: 9975 cttaatctggtactggcgacggcggcgaaattaaaagccaacccgcagccggagcttttg 9916


Query: 121 aagcacaaagtcattgccagctgtttcttcgaggcctc 158
|| || ||||| || |||||||| || ||||| |||||
Sbjct: 9915 aaacataaagtgatcgccagctgctttttcgaagcctc 9878


Database: fg
Posted date: Dec 18, 2007 6:08 PM
Number of letters in database: 12,243,887
Number of sequences in database: 884

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 884
Number of Hits to DB: 21,910
Number of extensions: 1351
Number of successful extensions: 38
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 12,243,887
Length adjustment: 16
Effective length of query: 146
Effective length of database: 12,229,743
Effective search space: 1785542478
Effective search space used: 1785542478
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
S2: 21 (42.1 bits)