Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~element/Term3/search_3T.txt Дата изменения: Tue Dec 18 19:04:08 2007 Дата индексирования: Mon Oct 1 21:25:43 2012 Кодировка:

TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= PYRB_ECOLI P0A786 Aspartate carbamoyltransferase catalytic
chain (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase).
(311 letters)

Database: fg
884 sequences; 12,243,887 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section... 571 e-164
AE012388 AE008922 |AE012388| Xanthomonas campestris pv. campestr... 128 2e-30
embl|AE006119|AE006119 Pasteurella multocida subsp. multocida st... 77 5e-15
AE012332 AE008922 |AE012332| Xanthomonas campestris pv. campestr... 55 3e-08
AE008762 AE006468 |AE008762| Salmonella typhimurium LT2, section... 30 0.68
AE008914 AE006468 |AE008914| Salmonella typhimurium LT2, section... 27 7.5
AE012202 AE008922 |AE012202| Xanthomonas campestris pv. campestr... 27 7.5
AE012528 AE008922 |AE012528| Xanthomonas campestris pv. campestr... 27 9.8

>AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section 213 of
220 of the complete genome.
Length = 20095

Score = 571 bits (1472), Expect = e-164
Identities = 286/298 (95%), Positives = 292/298 (97%)
Frame = -2

Query: 1 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF 60
MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF
Sbjct: 10035 MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF 9856

Query: 61 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS 120
ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS
Sbjct: 9855 ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS 9676

Query: 121 GNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKF 180
G VPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLH+AMVGDLKYGRTVHSLTQALAKF
Sbjct: 9675 GQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAMVGDLKYGRTVHSLTQALAKF 9496

Query: 181 DGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSE 240
GNRFYFIAPDALAMPQYILDMLDEKG+AWSLH SIEEVMA+VDILYMTRVQKERLDPSE
Sbjct: 9495 SGNRFYFIAPDALAMPQYILDMLDEKGMAWSLHGSIEEVMADVDILYMTRVQKERLDPSE 9316

Query: 241 YANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDKTPHAWYFQQAGNGIFARQ 298
YANVKAQFVLRASDL+ A+ NMKVLHPLPR+DEI TDVDKTPHAWYFQQAGNGIFARQ
Sbjct: 9315 YANVKAQFVLRASDLNGARENMKVLHPLPRIDEITTDVDKTPHAWYFQQAGNGIFARQ 9142



Score = 75.5 bits (184), Expect = 2e-14
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%)
Frame = -1

Query: 6 YQKHIISINDLSRDDLNLVLATAAKLKANP----QPELLKHKVIASCFFEASTRTRLSFE 61
YQK + + D + +L +L AAKLKA+ + + L K IA F + STRTR SFE
Sbjct: 17869 YQKPFLKLLDFTASELTALLQLAAKLKADKKNGKEEQKLVGKNIALIFEKDSTRTRCSFE 17690

Query: 62 TSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFSG 121
+ + GA V + S+ + +G K E++ DT V+ D I R + E+SG
Sbjct: 17689 VAAYDQGARVT-YLGSSGSQIGHK-ESIKDTARVLGRMFDGIQYRGYGQEIVETLAEYSG 17516

Query: 122 NVPVLNAGDGSNQHPTQTLLDLFTIQE-TQGRLDN-LHVAMVGDLKYGRTVHSLTQALAK 179
VPV N G HPTQ L DL T+QE G+ N + + GD + +S+ +A A
Sbjct: 17515 -VPVWN-GLTDEYHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDAR-NNMGNSMLEA-AA 17348

Query: 180 FDGNRFYFIAPDALAMPQYIL-----DMLDEKGIAWSLHSSIEEVMAEVDILY 227
G +AP A PQ L M + G A +L I + D +Y
Sbjct: 17347 LTGLDLRLVAPKA-CWPQAALVAECSAMAKKNGGAITLTEDIASGVKGADFIY 17192


>AE012388 AE008922 |AE012388| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 296 of 460 of the complete
genome.
Length = 10043

Score = 128 bits (321), Expect = 2e-30
Identities = 97/303 (32%), Positives = 148/303 (48%), Gaps = 13/303 (4%)
Frame = -2

Query: 8 KHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIA-----SCFFEASTRTRLSFET 62
+H++++ L R L +L A +++ + K V+A + FFE STRTR SF
Sbjct: 1912 RHLLTLEGLPRATLLQLLDRAGQIRDAAVGRVGKRSVLAGTAVCTLFFEPSTRTRSSFHL 1733

Query: 63 SMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY-VDAIVMRHPQEGAARLATEFSG 121
+ RLGA V+ F A+TS +KGET DT+ + V V+RHP++GA E +G
Sbjct: 1732 AAQRLGADVLNFD--ASTSSTRKGETARDTLKNLEAMGVRGFVVRHPEDGAVERLAEAAG 1559

Query: 122 N-VPVLNAGDGSNQHPTQTLLDLFTIQETQGR-LDNLHVAMVGDLKYGRTVHSLTQALAK 179
++NAGDG + HPTQ LLD+ T+++ +G L V +VGD+K+ R S AL
Sbjct: 1558 EGTALINAGDGRSAHPTQGLLDMLTLRQAKGTDFSKLKVVIVGDVKHSRVARSDLHALRT 1379

Query: 180 FDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPS 239
P +L DMLD + + ++ D L M R+Q+ER++
Sbjct: 1378 LGAGEIRVCGPASLLPDD---DMLD----GCVVGEDFDAMLEGADALMMLRLQRERMEEG 1220

Query: 240 EYANVK---AQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVDKTPHAWYFQQAGNGI 294
+++ A + L L A + VLHP P R EI +V + +Q NG+
Sbjct: 1219 LVPSLEQYHADYGLTRERLARAGRDAAVLHPGPINRGVEITDEVADGAQSCVLRQVANGV 1040

Query: 295 FAR 297
R
Sbjct: 1039 AVR 1031


>embl|AE006119|AE006119 Pasteurella multocida subsp. multocida str.
Pm70 section 86 of 204 of the complete genome.
Length = 10661

Score = 77.4 bits (189), Expect = 5e-15
Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 16/292 (5%)
Frame = +1

Query: 5 LYQKHIISINDLSRDDLNLVLATAAKLK-----ANPQPELLKHKVIASCFFEASTRTRLS 59
L +H + + D + ++ +L +A LK QP L K K IA F + STRTR S
Sbjct: 7294 LRHRHFLRLMDFTPTEIQFLLDLSANLKKAKYTGTEQPRL-KGKNIALIFEKTSTRTRCS 7470

Query: 60 FETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEF 119
FE + + GA+V + + + +G K E++ DT V+ D I R + + ++
Sbjct: 7471 FEVAAYDQGANVT-YIGPSGSQIGHK-ESMKDTARVLGRMYDGIQYRGYGQELVEILAQY 7644

Query: 120 SGNVPVLNAGDGSNQHPTQTLLDLFTIQE--TQGRLDNLHVAMVGDLKYGRTVHSLTQAL 177
SG VPV N G + HPTQ L D T+ E RL+ + +A +GD + +S +
Sbjct: 7645 SG-VPVWN-GLTDDFHPTQILADFLTMLEHGEGKRLNQMKMAYLGDAR-NNMGNSFVEGA 7815

Query: 178 AKFDGNRFYFIAPDALAMPQYILD----MLDEKGIAWSLHSSIEEVMAEVDILYMTRVQK 233
A G +AP A Q +LD M + G + ++EE + VD LY T +
Sbjct: 7816 ALM-GMDLRLVAPKAYWPEQKLLDEVAEMAKKTGAKITCTENVEEGVKGVDFLY-TDIWV 7989

Query: 234 ERLDPSEYAN-----VKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDK 280
+P E +K V +A +K +H LP + T V K
Sbjct: 7990 SMGEPEEAWEQRINLMKPYQVNKALLEKTGNPKVKFMHCLPAFHDENTTVGK 8145


>AE012332 AE008922 |AE012332| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 240 of 460 of the complete
genome.
Length = 11470

Score = 54.7 bits (130), Expect = 3e-08
Identities = 48/164 (29%), Positives = 66/164 (40%), Gaps = 17/164 (10%)
Frame = -1

Query: 8 KHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRL 67
KH ++ D SR +L+ +L AA K N LK K IA FF S RTR SFE +L
Sbjct: 7069 KHFLNTQDWSRAELDALLTQAALFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQL 6890

Query: 68 GASVVGFS----------DSANTSLGKKGETLADTISVISTYVDAIVMR-------HPQE 110
G V + G E +A+ V+ YVD I +R ++
Sbjct: 6889 GGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKD 6710

Query: 111 GAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLD 154
++ F+ PV + HP Q L +QE G D
Sbjct: 6709 REDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPD 6578


>AE008762 AE006468 |AE008762| Salmonella typhimurium LT2, section 66 of
220 of the complete genome.
Length = 21913

Score = 30.4 bits (67), Expect = 0.68
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Frame = -3

Query: 3 NPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFET 62
N ++ +S N +S +DL+ ++AN L +T + ++
Sbjct: 17606 NEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVAL-------------ATLKQAQWQL 17466

Query: 63 SMHRLGASVVGFSDSANTSLGKKGET------LADTISV-ISTYVDAIVMRHPQEGAARL 115
S + A V G+ + +T G T L D+ S + Y + +RH +EG L
Sbjct: 17465 SQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGEPAL 17286

Query: 116 ATEFSGNV 123
T +SGNV
Sbjct: 17285 ITLYSGNV 17262


>AE008914 AE006468 |AE008914| Salmonella typhimurium LT2, section 218
of 220 of the complete genome.
Length = 22694

Score = 26.9 bits (58), Expect = 7.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3

Query: 182 GNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMA 221
G Y+I AL MP Y+L L G+ W L S E M+
Sbjct: 8490 GLSHYYIYSGALRMPNYVLPFL---GLPWLLVRSQERRMS 8380


>AE012202 AE008922 |AE012202| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 110 of 460 of the complete
genome.
Length = 10278

Score = 26.9 bits (58), Expect = 7.5
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -3

Query: 33 ANPQPELLKHKVIASCFFEASTRTRLS---FETSMHRLGASVVGFSDSANTSLGKKGETL 89
A+P P L K + SC+ A + +RLS S R G + + A S K TL
Sbjct: 9631 ASPMPLRLPIKRVRSCWISAESSSRLSQPNVANSADRCGTAYARQAARAAWSRSKLPSTL 9452

Query: 90 ADTISVIS 97
+ ++ IS
Sbjct: 9451 S*MLATIS 9428


>AE012528 AE008922 |AE012528| Xanthomonas campestris pv. campestris
str. ATCC 33913, section 436 of 460 of the complete
genome.
Length = 11874

Score = 26.6 bits (57), Expect = 9.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1

Query: 146 IQETQGRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQY 198
I++ LD+ HV GD + +V+ L + LA PD+ P Y
Sbjct: 1870 IKDVSFALDDFHVRWFGDGELNASVNCLDRQLATRGDKTALLFEPDSPDSPSY 2028


Database: fg
Posted date: Dec 18, 2007 6:08 PM
Number of letters in database: 12,243,887
Number of sequences in database: 884

Lambda K H
0.319 0.132 0.378

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 884
Number of Hits to DB: 3,645,201
Number of extensions: 44897
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 9
Length of query: 311
Length of database: 4,081,295
Length adjustment: 93
Effective length of query: 218
Effective length of database: 3,999,083
Effective search space: 871800094
Effective search space used: 871800094
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)