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оригинального документа
: http://kodomo.fbb.msu.ru/~podkovkina/kaks.html
Дата изменения: Fri Mar 21 18:35:34 2008 Дата индексирования: Mon Oct 1 20:00:37 2012 Кодировка: |
#------------------------------------------------------------------------# # WARNING: GYRB_ECOLY pepAlnPos 1: M does not correspond to atg # WARNING: GYRB_ECOLY pepAlnPos 436: R does not correspond to ggt # WARNING: GYRB_ECOLY pepAlnPos 759: S does not correspond to cgt # WARNING: GYRB_ECOLY pepAlnPos 760: R does not correspond to tgt #------------------------------------------------------------------------# 2 2412 GYRB_ECOLY atgtcgaattcttatgactcctccagtatcaaagtcctgaaagggctggatgcggtgcgt aagcgcccgggtatgtatatcggcgacacggatgacggcaccggtctgcaccacatggta ttcgaggtggtagataacgctatcgacgaagcgctcgcgggtcactgtaaagaaattatc gtcaccattcacgccgataactctgtctctgtacaggatgacgggcgcggcattccgacc ggtattcacccggaagagggcgtatcggcggcggaagtgatcatgaccgttctgcacgca ggcggtaaatttgacgataactcctataaagtgtccggcggtctgcacggcgttggtgtt tcggtagtaaacgccctgtcgcaaaaactggagctggttatccagcgcgagggtaaaatt caccgtcagatctacgaacacggtgtaccgcaggccccgctggcggttaccggcgagact gaaaaaaccggcaccatggtgcgtttctggcccagcctcgaaaccttcaccaatgtgacc gagttcgaatatgaaattctggcgaaacgtctgcgtgagttgtcgttcctcaactccggc gtttccattcgtctgcgcgacaagcgcgacggcaaagaagaccacttccactatgaaggc ggcatcaaggcgttcgttgaatatctgaacaagaacaaaacgccgatccacccgaatatc ttctacttctccactgaaaaagacggtattggcgtcgaagtggcgttgcagtggaacgat ggcttccaggaaaacatctactgctttaccaacaacattccgcagcgtgacggcggtact cacctggcaggcttccgtgcggcgatgacccgtaccctgaacgcctacatggacaaagaa ggctacagcaaaaaagccaaagtcagcgccaccggtgacgatgcgcgtgaaggcctgatt gcggtcgtttccgtgaaagtgccggacccgaaattctcctcccagaccaaagacaaactg gtttcttctgaggtgaaatcggcggttgaacagcagatgaacgaactgctggcagaatac ctgctggaaaacccaaccgacgcgaaaatcgtggttggcaaaattatcgatgctgcccgt gcccgtgaagcggcgcgtcgcgcgcgtgaaatgacccgccgtaaaggtgcgctcgactta gcgggcctgccgggcaaactggcagactgccaggaacgcgatccggcgctttccgaactg tacctggtggaaggggactccgcgggcggctctgcgaagcagggcggtaaccgcaagaac caggcgattctgccgctgaagggtaaaatcctcaacgtcgagaaagcgcgcttcgataag atgctctcttctcaggaagtggcgacgcttatcaccgcgcttggctgtggtatcggtcgt gacgagtacaacccggacaaactgcgttatcacagcatcatcatcatgaccgatgcggac gtcgacggctcgcacattcgtacgctgctgttgaccttcttctatcgtcagatgccggaa atcgttgaacgcggtcacgtctatatcgctcagccgccgctgtacaaagtgaagaaaggc aagcaggaacagtacattaaagacgacgaagcgatggatcagtaccagatctctatcgcg ctggacggcgcaacgctgcacaccaacgccagtgcaccggcattggctggcgaagcgtta gagaaactggtatctgagtacaacgcgacgcagaaaatgatcaatcgtatggagcgtcgt tatccgaaagcaatgctgaaagagcttatctatcagccgacgttgacggaagctgacctt tctgatgagcagaccgttacccgctgggtgaacgcgctggtcagcgaactgaacgacaaa gaacagcacggcagccagtggaagtttgatgttcacaccaatgctgagcaaaacctgttc gagccgattgttcgcgtgcgtacccacggtgtggatactgactatccgctggatcacgag tttatcaccggtggcgaatatcgtcgtatctgcacgctgggtgagaaactgcgtggcttg ctggaagaagatgcgtttatcgaacgtggcgagcgtcgtcagccggtagccagcttcgag caggcgctggactggctggtgaaagagtcccgtcgcggcctctccatccagcgttataaa ggtctgggcgagatgaacccggaacagctgtgggaaaccactatggacccggaacgttgt cgtatgctgcgcgttaccgttaaagatgcgattgctgccgaccagttgttcaccacgctg atgggcgacgccgttgaaccgcgccgtgcgtttattgaagagaacgccctgaaagcggcg aatatcgatatt Q9KVX3|GYRB_VIBCH atgtcgaacaattacgattcatcgagtattaaggtactgaagggtctggatgcggtacgc aagcgtccgggtatgtacatcggcgacactgatgatggcaccggtctgcaccacatggtt tttgaggtggtggataactcaattgatgaagcgttggcaggttactgtaaagacatcgtg gtcaccatccacgaagacaactcagtgtcagtcagcgatgacggtcgtggtatcccgacc gaaatgcatcctgaagagaaagtgtctgcggcagaagtcatcatgactgtactgcacgcc ggcggtaaatttgacgacaactcctataaagtctccggtggtctgcacggggtaggtgtg tcggtggttaacgcgctttctgaaaaagtgctgcttaccatttatcgtggtggcaagatc cattcgcaaacttaccatcatggtgtgccacaagcaccgttggctgtggtaggtgagaca gagcgtaccggtactaccgtacgtttctggcctagtgcacagacttttaccaatatcgaa ttccattacgacattttggctaaacgcctgcgtgagctgtcattcctgaactctggcgtg tcgatcaagctgaccgatgaacgtgaagaagataaaaaagaccacttcatgtatgaaggg ggtattcaagcgtttgtgacccacttgaaccgtaacaaaacgccaatccatgagaaagtc ttccactttaaccaagagcgtgaagatggcatcagcgtggaagtggcaatgcagtggaac gatggtttccaagaaaacatctactgctttactaacaacatcccacagcgtgatggtggt acccacttagccggtttccgtggtgcgttgacccgtactttgaacaactacatggacaaa gaaggcttctcgaagaaagcgcaagcggcaacctcgggtgatgatgcgcgtgaaggctta acggcagtggtttcggtgaaagtgccggatcctaaattctcaagccaaaccaaagataag ctggtttcttcggaagtaaaatccgcggttgagtcagccatgaatgagaagctggcggat ttcctagcggaaaacccaagcgaagcgaaaaacgtttgttcgaagattattgatgcggcg cgtgcgcgtgaagcggcgcgtaaagcccgggaaatgactcgccgtaaaggcgcgctggat cttgctggcttacccggcaaactggcggattgtcaggaaaaagacccagcattgtctgaa ctctacatagtggagggtgactcagcgggcggttcagccaaacaaggccgtaaccgtaag aatcaagcgattctgccgctgaaaggtaaaatcctcaacgtagaaaaagcgcgttttgac aagatgttgtcttcacaagaagtcgcgaccctcatcactgcattaggctgtggtatcggc cgtgatgagtacaacccagataaactgcgttatcacaacatcatcatcatgaccgatgcg gacgtcgacggctcgcacattcgtactctgctgttgacctttttctaccgccaaatgcct gagttgattgagcgtggttacatctacattgctcagccaccactgtataaagtgaagaaa ggcaaacaagagcagtacatcaaagatgaagaggcgatgaaccagtaccaagtggcactg gcgatggatggtgcagagctgcacgtgaatgccgatgcgccagcgttagcgggtgaaccg ctggagaagctggttcagcaatataacgccgcgatcaagctggttgagcgcatgagccgc cgttacccttacgcgatgctgcatgagctgatttacgtaccacgcatcaatgccgagctg tgtgcggataaagccgcggttgaagcttggacacagcgtttagtcgaacagttgaatgct aaagaagtgggtgcgagccaatacagcgttctggttgaacacaatgctgagctgaatgtg tacttgccaaaaattcaggtgcgtactcacggtgtgactcatgaatacttactgagcgcg gatctgatcaactcgaaagagtacgctaagttagccgatctgtcggaagcgctggacggt ttgattgaagcgggagcgtttatcaaacgtggtgagcgagtacaaccgatcagcagcttt gccgccgcgctggattggctgatcaaagagtcgcgccgcggtctgtctatccaacgctat aaaggtctgggcgaaatgaaccctgatcagctgtgggaaactacgatggatccagaaacg cgtcgtatgatgcaagtcactatcgaagatgcggtaggcgcggacgaactgttcacgacg ctcatgggcgatcaagttgaaccacgtcgtgcatttatcgaaaccaacgcactgaaagtg gccaacctcgac
| Synonymous (KS) and non-synonymous (KA) substitution rates calcualted by codeml in the PAML package: | |
| KS = 51.5209 | |
| KA = 1.0682 | |
| KA/KS = 0.0207 | |
| You can see the parameters used in codeml to calculate these values. | |
| If you use these values, please cite the following peper: | |
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