Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~smivic/Projects/1NZJ/downloads/myproteins.edialign Дата изменения: Thu Apr 23 23:45:38 2009 Дата индексирования: Mon Aug 17 23:02:54 2009 Кодировка:

DIALIGN 2.2.1
*************

Program code written by Burkhard Morgenstern and Said Abdeddaim
e-mail contact: dialign (at) gobics (dot) de

Published research assisted by DIALIGN 2 should cite:

Burkhard Morgenstern (1999).
DIALIGN 2: improvement of the segment-to-segment
approach to multiple sequence alignment.
Bioinformatics 15, 211 - 218.

For more information, please visit the DIALIGN home page at

http://bibiserv.techfak.uni-bielefeld.de/dialign/

************************************************************



program call: edialign


Aligned sequences: length:
================== =======

1) GLUQ_ECOLI 298
2) GLUQ_SYNP6 300
3) GLUQ_SYMTH 323
4) GLUQ_COREF 306
5) GLUQ_THIDA 301
6) GLUQ_GEOSL 314
7) GLUQ_CITK8 298
8) GLUQ_YERPS 331
9) GLUQ_VIBVU 303

Average seq. length: 308.2


Please note that only upper-case letters are considered to be aligned.


Alignment (DIALIGN format):
===========================

GLUQ_ECOLI 1 -------MTD ---------- ---------T QYIGRFAPSP SGELHFGSLI
GLUQ_SYNP6 1 maiapr---- ---------- ---------- ---GRFAPTP SGDLHLGSLV
GLUQ_SYMTH 1 mLC------- ---------- ---------- ---GRFAPTP SGALHLGNAR
GLUQ_COREF 1 -MA------- ---------- ---------- ---GRYAPSP SGDLHFGNLR
GLUQ_THIDA 1 mn-------- ---------- --------PA ACVGRFAPSP TGPLHLGSLV
GLUQ_GEOSL 1 mcvpstpqpp v--------- ---------- --IGRFAPSP TGPLHVGSLV
GLUQ_CITK8 1 -------MTN ---------- ---------A HYIGRFAPSP SGELHFGSLI
GLUQ_YERPS 1 mvqqaviqrs anqqlsnqrs anqratnqPT EYVGRFAPSP SGDLHFGSLI
GLUQ_VIBVU 1 mlpfcfeMTS ---------- ---------M SYIGRFAPSP SGPLHFGSLI

0000000000 0000000000 0000000001 1247777777 7777777777

GLUQ_ECOLI 25 AALGSYLQAR ARQGRWLVRI EDIDPPREVP GAAETILRQL EHYGLHWDGD
GLUQ_SYNP6 24 AAVGSYLHVR SQCGTWLLRI DDLDAPRVVP GASDRIQTCL EAFGLHWDEV
GLUQ_SYMTH 21 TALLAWLHAR RAGGRFILRI EDIDRARSRP HLAEQAIADL RWLGLDWDEg
GLUQ_COREF 20 TALLAWVFAR HDGRDFLMRV EDIDEQRSTM ESAERQLSDL SMLGLDWDGD
GLUQ_THIDA 25 AAVASFLDAR AAGGRWLVRM EDLDRPRCEP GAAGIILRQL EAYGLVWDGD
GLUQ_GEOSL 30 AAVASYAMAR RQGGLWLVRM EDLDTPRVVP GMADDILRTL ECLGFDWDGD
GLUQ_CITK8 25 AALGSYLRAR SQHGIWRVRI EDIDPPREVP GAAETILRQL EHYGLHWDGD
GLUQ_YERPS 51 AALGSYLQAR AQGGKWLVRI EDIDPPREVP GAASRILAAL EHYGLHWDGP
GLUQ_VIBVU 32 AALGSYFQAK SQHGQWLVRI EDLDPPREMP GAADLILKTL ETYHLFWDGE

7777776677 6657676777 7776666666 6666666666 6666666644

GLUQ_ECOLI 75 V--------L WQSQRHDAYR EALAWLHEQG LSYYCTCTRA RIQSIGGI--
GLUQ_SYNP6 74 V--------Y FQQPQQEHYQ AALEQLTATG RVYRCQCSRK QLSQSGdsvs
GLUQ_SYMTH 71 pdvggphgpY CQSEREELYR DALARLQAEG RLYPCYCSRA QLMAIASA--
GLUQ_COREF 70 V--------L YQSSRHDAYR AAIAQLd--- -TYECYCSRR DIQEASRA--
GLUQ_THIDA 75 V--------L VQSQRDHAYA AALDMLKAQG AAYPCACTRA QLVQAPRnre
GLUQ_GEOSL 80 I--------M RQSRRADAYG AALQRLLAAG HAYPCGCSRA EIARAATA--
GLUQ_CITK8 75 I--------L WQSQRHDAYR DALAWLRQQN LSYYCTCPRA RIQRIGGV--
GLUQ_YERPS 101 V--------I YQSQRHEAYR ATLNWLEQQG LSYYCTCTRS RIHQLGGF--
GLUQ_VIBVU 82 V--------V YQSQRHHLYQ AQIDHWLQSG QAYYCQCSRK QIKEMGGY--

5000000005 4555555554 4443333333 3344444444 4432221100

GLUQ_ECOLI 115 ------YDGH C--------- ---------- ---RVLHHGP DN--AAVRIR
GLUQ_SYNP6 116 vdgslrYPGF C--------- ---------- ---RDRQLSS Eiegsdrlnv
GLUQ_SYMTH 119 ------PHGl tsegpaYPGT CRRLTPEERR AREA----DG KT--PSLRFA
GLUQ_COREF 106 ------PHAK PGM---YPGT CRELTPGQRA ERRAGLAAQN RH--PAIRLR
GLUQ_THIDA 117 gem------- --L---YPGT CRn------- ----GLPADT VA--RAWRVR
GLUQ_GEOSL 120 ------PHDG DGE---IPyp nlc------- --RRGLPPGK EP--RSFRVR
GLUQ_CITK8 115 ------YDGH C--------- ---------- ---RTLQHGP EN--AAVRIK
GLUQ_YERPS 141 ------YDGY C--------- ---------- ---RDRHLP- -AsgAAIRLR
GLUQ_VIBVU 122 ------YNGH C--------- ---------- ---QELHLD- -A--GAIRLK

0000001111 1000000000 0000000000 0001111000 0000011111

GLUQ_ECOLI 135 QQHPVTQFTD QLRGIIHADE KLAREDFIIH RRDGL--FAY NLAVVVDDHF
GLUQ_SYNP6 144 QNLPAIALED AWQGRYQQDL AQAVGDFILR RRDRL--FSY HLATVVDDAR
GLUQ_SYMTH 157 LPDEEIAFTD LIAGPQRFPP G-AGGDFVVL RADGV--IGY QLAVVVDDAL
GLUQ_COREF 145 AEVDSFTVVD RLRGEVTGDV ----DDFILL RggqepgWAY NLAVVVDDAF
GLUQ_THIDA 142 APDASIRLHD RIHGDLQQNL AREVGDFIVK RADGL--FAY QLAVVVDDAF
GLUQ_GEOSL 150 VPAEPVEFTD LVMGPQHHDL PAMCGDFVIK RADGL--FAY QLAVVVDDEA
GLUQ_CITK8 135 QFSPVMQFHD VLRGDIQADP LLAREDFIIH RRDGL--FAY NLAVVVDDHF
GLUQ_YERPS 161 QTQPVYAFYD KLLGELHAHP ALAQEDFIIR RRDGL--FAY NLAVVVDDAF
GLUQ_VIBVU 140 MTQPITHFDD LRHGQMHIPL ELAQEDFIIK RRDGL--FAY NLAVVLDDID

1111111111 1111111111 1111266666 6666700888 8888888888

GLUQ_ECOLI 183 QGVTEIVRGA DLIEPTVRQI SLYQLFGWKV PDYIHLPLAL NPQGAKLSKQ
GLUQ_SYNP6 192 QGITEVIRGL DLLASTPRQI ALQQLLNLPT PHYGHLPLVV WPNGDKLSKQ
GLUQ_SYMTH 204 MGVTHVLRGG DLLDSTPRQI LLYRALGRPV PAFGHLPLLL GPDGARLAKR
GLUQ_COREF 191 QGVDQVVRGD DLLDSVARQA YLCTLLGAAI PEYVHVPLVL NARGQRLAKR
GLUQ_THIDA 190 QGITHVVRGA DLLWNTPRQI YLQGLLGVPT PTYAHVPLIT NVAGQKLSKQ
GLUQ_GEOSL 198 QGVTQVVRGA DLLSSTPRQI VLQRLLGFDT PVYAHVPLVT GPGGGKLSKR
GLUQ_CITK8 183 QGVTEIVRGA DLIEPTVRQI SLYQQFGWRA PDYIHLPLAL NEQGAKLSKQ
GLUQ_YERPS 209 QGVTEIVRGA DLIEPTVRQI ALYQQLQHPV PSYIHLPLAL NNQGNKLSKQ
GLUQ_VIBVU 188 QGVTEVVRGA DLIEPTGRQI SLYRMLGQVP VRYLHLPLAM DKNGNKLSKQ

8888888888 9996775665 5655554334 4455555555 5455555555

GLUQ_ECOLI 233 NHAPALPK-- ---GDPRP-- -----VLIAA LQFLGQQA-- ----------
GLUQ_SYNP6 242 TKAPPLDL-- ---RQAPA-- -----LLSQA IGHLGLAM-- ----------
GLUQ_SYMTH 254 HGAVTL---- ---------- --------AG IRAAGTSPet vvghlaylsg
GLUQ_COREF 241 DGAVTLRE-- ---MLVDApl thiisSLAAS LGYEGIST-- ----------
GLUQ_THIDA 240 TRAPALPE-- ---RGRDA-- -----TLAQA LVTLGHPP-- ----------
GLUQ_GEOSL 248 DNALSLaagr dltREGGM-- -----LLLAA LRFLGQSP-- ----------
GLUQ_CITK8 233 NHAPALPE-- ---GDPRP-- -----VLIAA LRFLGQNA-- ----------
GLUQ_YERPS 259 NHAPPLPN-- ---GDPRP-- -----ILIDA LKFLRQPL-- ----------
GLUQ_VIBVU 238 NHATGIDL-- ---THPAS-- -----MILEA MAFLGFAI-- ----------

4443332100 0001111100 0000012211 1111111100 0000000000

GLUQ_ECOLI 259 ---------E AHWQDFSVEQ ILQSAVKNWR LTAVPESAIV NSTFSNASC-
GLUQ_SYNP6 268 ---------P SDLQGAPVGE QLAWAIAHFP APRLSKQPds ls--------
GLUQ_SYMTH 282 lvdqpepvrP EELIPVFDLA RIPR-----E PVRIPa--ET IAALSGGTA-
GLUQ_COREF 274 ---------P VELLAVFDPG ALSL-----E Pfiftglngs atdrmdk---
GLUQ_THIDA 266 ---------P GELAGAAPAE LLTWASTHWH IENVPTHPVV akpap-----
GLUQ_GEOSL 279 ---------P AELAGASGAR VLRWAAGNFE PSAIPTaaap fhasp-----
GLUQ_CITK8 259 ---------T AQWQDMHTDE LLQYAVDNWT LTTVPESASV NPAFSNASC-
GLUQ_YERPS 285 ---------P EYWQDLDLYL LLRYAVEHWT LVSIPLQGAI TPqktqrhsq
GLUQ_VIBVU 264 ---------P KELHQANLDE ILHWGVQNWR LNQLPESLEI TARFSNGTA-

0000000001 1111101111 1111111111 1111100000 0000000000

GLUQ_ECOLI 299 ------
GLUQ_SYNP6 301 ------
GLUQ_SYMTH 324 ------
GLUQ_COREF 307 ------
GLUQ_THIDA 302 ------
GLUQ_GEOSL 315 ------
GLUQ_CITK8 299 ------
GLUQ_YERPS 326 skhgel
GLUQ_VIBVU 304 ------

000000




Sequence tree:
==============

Tree constructed using UPGMA based on DIALIGN fragment weight scores

((((((GLUQ_ECOLI :0.002636GLUQ_CITK8 :0.002636):0.000850GLUQ_YERPS :0.003486):0.001291GLUQ_VIBVU :0.004776):0.002608(GLUQ_THIDA :0.005515GLUQ_GEOSL :0.005515):0.001870):0.000433GLUQ_SYNP6 :0.007817):0.003320(GLUQ_SYMTH :0.008484GLUQ_COREF :0.008484):0.002653);