... find changesets by author, revision, files, or words in the commit message . fix error caused by applying secondary structure markup This bug should be digged. For some reason BioPython's DSSP failed to get secondary structure information of a residue: $ ./pair_cores/pair_cores.py -i test/aln1.fasta -y aaa -e True .. ... author . Boris Nagaev <bnagaev@gmail.com> . ... 2 **.py = native . 3 **.txt = native . ... 14 Makefile = native . ... 27 # this exception must go away . ...