... annotate . ... lib.block -- copy of sequences --> link to old sequences, when create from block . ... BurkovBA@0 . ... 5 import project . ... bnagaev@129 . ... 15 * self.project -- project object, which the block belongs to . ... 18 * self.positions -- sorted list of positions of the project.alignment that . ... bnagaev@112 . 30 def __init__ ( self , project , sequences = None , positions = None ): . ... 39 positions = range ( len ( project )) . ... project = project . ... project , self . ...

Еще в разделе: (Показать все результаты (>112902) - kodomo.fbb.msu.ru/ )

• allpy: test/test.py annotate

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

Еще в разделе: (Показать все результаты (>1335) - monkey.belozersky.msu.ru/ )

• SVETKA, a program for multiple sequence alignments analysus
• SVETKA, a program for multiple sequence alignments analysis
• SDP home page

... MAST - Motif Alignment and Search Tool . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

Еще в разделе: (Показать все результаты (>5788) - kodomo.cmm.msu.ru/ )

• Task 9 (sequence annotation)
• Global and Local Alignment of A.A Sequences
• petri_dish: Bacteria.py annotate

SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

Еще в разделе: (Показать все результаты (>6987) - mouse.belozersky.msu.ru/ )

• Geometrical core
• S : rm_systems
• Example of alignment

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

Еще в разделе: (Показать все результаты (>32) - mouse.genebee.msu.ru/ )

• ConClus
• Nhunt

GDE alignment format is one of standard alignment formats. A popular program for sequence alignment, Clustal, for example, can save alignment in this format. In this format, all letters indicating amino acids are in lower case, gaps are indicated by dashes. Sequences are placed one after another, name of each sequence is placed onto a separate line and begins with ‘%’. The sequence is placed afterwards beginning on the next line and may be broken into several lines. ...

Еще в разделе: (Показать все результаты (>144) - bioinf.fbb.msu.ru/ )

• RNA Alignment
• SDPlight
• Input Formats

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

Еще в разделе: (Показать все результаты (>4268) - lib.mexmat.ru/ )

• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Brown S.M. - Bioinformatics: A Biologist's Guide to Biocomputing and the
• Korf I., Yandell M., Bedell J. - Blast (Basic Local Alignment Search Tool) ::

AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

Еще в разделе: (Показать все результаты (>168) - www.genebee.msu.ru/ )

• AliComp - GeneBee Alignment Comparison Help
• Multiple alignment
• TreeTop - Phylogenetic Tree prediction

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

Еще в разделе: (Показать все результаты (>240) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/197.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/164.pdf

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

Еще в разделе: (Показать все результаты (>705) - www.sai.msu.su/ )

• SAL- Other Scientific Fields - Chemistry, Biology Related - DCSE
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER

Изучение статистики наиболее длинной общей подпослеовательности двух случайных подпоследовательностей является одной из самых интересных и трудных задач вычислительной математической биологии. В докладе будут представлены результаты, касающиеся статистического распределения общих подпоследовательностей в упрощенном (некоррелированном) варианте модели, т.наз. модели Бернулли . ...

Еще в разделе: (Показать все результаты (>70) - polly.phys.msu.ru/ )

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

Еще в разделе: (Показать все результаты (>151) - www.parallel.ru/ )

• Lower-bound and upper-bound markers | PARALLEL.RU - Информационно-аналитический

under the terms of the GNU General Public License v2 # $Id$ EAPI= 5 inherit perl-module DESCRIPTION= Do It Yourself Annotation , a collection of tools and libraries for sequence assembly and annotation HOMEPAGE= http ://gmod.org/wiki/ Diya SRC_URI= mirror://sourceforge/diyg/files/ diya / diya -1.0/ S="${WORKDIR}/diya-${PV/_/-}" SRC_TEST=do src_install() { mydoc="INSTALL README docs/diya.html" perl-module_src_install insinto /usr/share/${PN} doins -r diya.conf docs examples scripts } ...

Еще в разделе: (Показать все результаты (>9735) - mirror.msu.net/ )

• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.050.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/mafft/mafft-7.215.ebuild
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/t-coffee/t-coffee-9.03.1318-r1.ebuild

... Another way to fend off and detect impostors is to use call sequence checks. Call sequence checks help you protect against intruders that somehow managed to find out the password you log into your UUCP system with. ... When the attacker call your UUCP feed and steals your mail, this will increase the feeds call sequence number by one. ... If you have enabled call sequence checks, you should check your log files regularly for error messages that hint at possible attacks. ...

Еще в разделе: (Показать все результаты (>117) - itpm.msu.su/ )

• MySQL Reference Manual for version 3.23.10-alpha. - H Description of MySQL

. Выберите категорию обращения: Общие вопросы Отчеты Рейтинги Диссертационные советы Конкурсы Ввод данных Структура организаций Пользователи Проблемы с регистрацией\входом в систему . Тема обращения: . Описание проблемы: . Введите почтовый адрес: . Войти в систему . Регистрация . Главная . Поиск . Статистика . О проекте . Помощь . Издательство: Taylor & Francis . Местоположение издательства: United Kingdom . ї 2011-2015 НИИ механики МГУ . Лаборатория 404. Все права защищены. обратная связь . Создать

Еще в разделе: (Показать все результаты (>450) - istina.msu.ru/ )

• Journal of Integer Sequences - журнал | ИСТИНА - Интеллектуальная Система
• Protein sequences & data analysis - журнал | ИСТИНА - Интеллектуальная Система
• METHOD FOR SIMULTANEOUSLY DETECTING A PLURALITY OF RNA SEQUENCES IN A

Next: Roche lobe overflow (stage Up: Principal Evolutionary States of Previous: Main-sequence stars (stage I) . ... The duration of this stage for a binary component is no longer a function of the stellar mass alone (as in the case of single stars), but also depends on the initial binary type (A, B or C) (Iben and Tutukov, 1985, 1987[ 74 , 75 ]): . The radius of the post-MS star rapidly increases (on a thermal time-scale)   and reaches characteristic giant values. ...

Еще в разделе: (Показать все результаты (>112) - xray.sai.msu.ru/ )

• Main-sequence stars (stage I)
• Calculation of Evolutionary Tracks

Astronomy Picture of the Day . La Palma Eclipse Sequence . ... Credit Copyright: Miguel Claro ( TWAN ) Explanation: At left, a dramatic image sequence follows late September's total lunar eclipse above a rugged landscape and sea of clouds from the Canary island of La Palma . Composited in a circular fisheye projection, the brightness of the Full Perigee Moon changes drastically in transition from outside the total eclipse phase compared to its dim glow during the 72 minute long totality . ...

Еще в разделе: (Показать все результаты (>4322) - www.astronet.ru/ )

• Moon Shadow Sequence
• Bakasa Eclipse Sequence
• A Mercury Transit Sequence

. [ Войти ] . Главная -> Фильмы -> The Lost Spider Pit Sequence . Пользователи . Демо . Деньги . Фильмы . Форум . The Lost Spider Pit Sequence . Новая Зеландия 2005 . отметить . Фантастика . Ужасы . Триллер .

Еще в разделе: (Показать все результаты (>76) - kinfo.ru/ )

... Quaternary research centre, University of Novi Sad, Trg D. Obradovi?a 3, 21000 Novi Sad, Serbia and Montenegro . This short communication highlights importance of our excursion area to loess research in Europe, beginning with the work of Luigi Ferdinando Marsigli (figure 1). ... Marsigli’s observations of loess-paleosol sequences was published one century before pioneering work of von Leonard’s (1823/1824) about characterization of loess deposits (Zoeller Semmel, 2001). ...

Еще в разделе: (Показать все результаты (>97) - www.fadr.msu.ru/ )

• SPECIAL ISSUE OF CATENA «RECONSTRUCTION AND CLIMATIC IMPLICATIONS OF PALEOSOLS»
• THE POST-SIMPOSIUM EXCURSION (July 31 - August 7,1998)

... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

Еще в разделе: (Показать все результаты (>28728) - dualopt1.cmm.msu.ru/ )

• GluePlugin - TWiki - TWiki
• TWikiMetaData - TWiki - TWiki