... graph . ... patch_structure: patch allpy.graph not to print "Start ... algorithm" see #152 . ... :41:26 2012 +0400 1.2 +++ b/pair_cores/patch_structure.py Sun Mar 25 21:51:52 2012 +0400 1.3 @@ -10,7 +10,7 @@ 1.4 from Bio.PDB import Select 1.5 from Bio.PDB import Superimposer, CaPPBuilder, PDBIO 1.6 1.7 -from allpy . graph import Graph 1.8 +from allpy . graph import * 1.9 from allpy .homology import MonomerHomology 1.10 from allpy .structure import * 1.11 from allpy ...

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• allpy: 53690e470eff
• allpy: 53800c7e3458
• allpy: 6134ae1dfdae

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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Электронная библиотека Попечительского совета . ... Peters C.A., Steenbrink J.H. - Mixed Hodge Structures . ... Название: Mixed Hodge Structures . Авторы: Peters C.A., Steenbrink J.H. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Mehlhorn K. - Data Structures and Algorithms :: Электронная библиотека
• Sherrod A. - Data structures and algorithms for game developers :: Электронная
• Weiss M.A. - Algorithms, data structures, and problem solving with C++ ::

... Help/Guide . About Trac . ... Previous Changeset . Next Changeset . ... 7 added . 4 deleted . body.py (deleted) . game.py (deleted) . tanchiki.py (added) . tanchiki/__init__.py (added) . tanchiki/body.py (added) . tanchiki/game.py (added) . ... tanchiki/user.py (added) . tanchiki/vector.py (added) . user.py (deleted) . vector.py (deleted) . Note: See TracChangeset for help on using the changeset viewer. ... Powered by Trac 0.12.5 . ...

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• Changeset 6:721fdbb815c8 тАУ Cyclyc Cell Automata
• Changeset 19:31ea2608cc39 for tanchiki тАУ Tanchiki
• Secondary Structure

RNA Tertiary Structure Modelling . ... Two steps to fold coarse-grained model of RNA tertiary structure . ... fill in RNA secondary structure form with CT format (also with pseudoknots); . ... push "Finish Step #1" button to obtain secondary and intermediate* structures. * intermediate structure is the structure with minimum of "free energy" contains formed helixes and stacking, but without tertiary interactions . RNA secondary structure form . ... some useful RNA secondary structure databases: . ...

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Secondary structures in the coding regions of mRNAs: literature survey and comparison of prediction methods Aleksandra Vasileva3, Michael Kiening1, Dmitrij Frishman1, 1 2,3 Department of Bioinformatics, Technische UniversitДt MЭnchen ... 195251 , Russia, aleksandra.vasileva.spbpu@gmail.com mRNA molecules contain three main domains ­ 5'UTR (untranslated region), CDS ( coding region), and 3'UTR ... One of the options in this case is to compute the distance between two RNA structures. ... Fig. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/202.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/101.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/157.pdf

Выберите категорию обращения: Общие вопросы Отчеты Рейтинги Диссертационные советы Конкурсы Ввод данных Структура организаций Пользователи Проблемы с регистрацией\входом в систему . ... Войти в систему . ... Другие названия журнала: Random Structures and Algorithms . ... Shabanov D.A. в журнале Random Structures and Algorithms , издательство John Wiley & Sons Inc. ... Kostochka A.V., Sahozhenko A.A., Weber K. в журнале Random Structures and Algorithms , издательство John Wiley & Sons Inc. ...

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• Journal of Molecular Structure - журнал | ИСТИНА - Интеллектуальная Система
• Acta Crystallographica Section E: Structure Reports Online - журнал | ИСТИНА -
• PHYSICS OF LOW-DIMENSIONAL STRUCTURES - журнал | ИСТИНА - Интеллектуальная

... A variable structure algorithm using the (3,2)-scheme and the Fehlberg method" . ... Its main and intermediate numerical schemes are L -stable. ... A stability control inequality for the explicit three-stage Runge-Kutta-Fehlberg method of third order is proposed. ... Numerical results are discussed. Keywords: stiff systems, (m,k)-schemes, Fehlberg method, RungeтАУKutta methods, accuracy and stability control, variable structure algorithm, ordinary differential equations, numerical methods. ...

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• "Routing on lattice-cellular structures"
• "Application of multilevel structured matrices for the solution of direct and
• "The structure of a stable manifold for fully implicit schemes"

... wLake 1.7 . wLake is a tool which allows to identify clusters of a structural water molecules in given superimposed 3D structures. Put your coordinates in PDB format into the text area. Select a distance threshold. Two water molecules from different structures will be concidered as located in the same space point if the distance between centers of oxygen atoms is less than this threshold. ... EACH STRUCTURE INCLUDING ITS WATER MOLECULES MUST BE PRESENTED AS SEPARATE MODEL: EXAMPLE. ...

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• Geometrical core

... История кафедры . ... младших курсов . ... Уважаемые студенты 1-го, 2-го и 3-го курсов! ... Семинар кафедры проходит по пятницам в 15.20 в комн. ... а также на стендах кафедры на 2-м и 4-м этажах. Информацию о более ранних событиях см. в разделе "Жизнь кафедры" . ... 119991, Москва, Ленинские горы, д.1, стр.2, МГУ имени М.В.Ломоносова, физический факультет, кафедра фотоники и физики микроволн . ...

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S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• Hydrophobic clusters
• ETS_3D_conservation
• DNA/RNA-Protein structures

Protein Structure Software . Dr. Andrew C.R. Martin has written various programs and libraries for both general applicability and for use with protein structure. Here are the listings for programs: . ... ProFit -- Designed to be the ultimate(?) protein least squares fitting program. ... The author also developed an extensive library of C routines for the manipulation of protein structures. ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• APOD: 2013 May 19 - Earths Richat Structure
• APOD: January 5, 1998 - Earth's Richat Structure
• APOD: 2000 October 8 - Earth's Richat Structure

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• Site Cluster
• SDPsite - PF07978
• SDPsite - PF01205

... Географии мирового хозяйства . ... География" . ... Zilitinkevich, S.S., 1972: On the determination of the height of the Ekman boundary layer. Boundary-Layer Meteorol., 3, 141-145 (160 citations) . Zilitinkevich, S.S., 1975: Comments on "A model of the dynamics of the inversion above a convective boundary layer". ... Boundary-Layer Meteorol., 46, 367-387 (54 citations) . ... Boundary-Layer Meteorol., 81, 325-351 (52 citations) . ... Boundary-Layer Meteorol. 105, 389-409 (36 citations) . ...

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• journal 'GEOGRAPHY, ENVIRONMENT, SUSTAINABILITY'
• Вестник Московского университета. Серия 5. География

... One semid data structure for each set of semaphores in the system. */ struct semid_ds { struct ipc_perm sem_perm; /* permissions .. see ipc.h */ time_t sem_otime; /* last semop time */ time_t sem_ctime; /* last change time */ struct sem *sem_base; /* ptr to first semaphore in array */ struct wait_queue *eventn; struct wait_queue *eventz; struct sem_undo *undo; /* undo requests on this array */ ushort sem_nsems; /* no. of semaphores in array */ }; . ...

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• Internal and User Data Structures
• Internal Data Structures
• Kernel sem structure

... О UNИX . ... 52 Structure in the wiki . Неизменяемая страница . ... Many conventional websites use very branched structures with many hierarchy levels. In wikis linking is heavily used. ... all important topics are located in main pages. only if a topic has many subtopics (which aren't main topics), subpages are used. ... creation of a basic structure of pages. definitions of name conventions for page names. decision to use CamelCase or free links?. definitions of important categories. ...

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• PspoMaterials/AltDocs_hd_structure - UNИX
• LecturesVMSH/06_Structures_Functions - UNИX
• Index of /static/AltDocs_hd_structure

... О UNИX . ... 52 Structure in the wiki . Неизменяемая страница . ... Many conventional websites use very branched structures with many hierarchy levels. In wikis linking is heavily used. ... all important topics are located in main pages. only if a topic has many subtopics (which aren't main topics), subpages are used. ... creation of a basic structure of pages. definitions of name conventions for page names. decision to use CamelCase or free links?. definitions of important categories. ...

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• PspoMaterials/AltDocs_hd_structure - UNИX
• LecturesVMSH/06_Structures_Functions - UNИX
• Index of /static/AltDocs_hd_structure

... О физическом факультете . ... Помощь факультету . ... Лицензионное матобеспечение Microsoft . ... Главная / О факультете / Подразделения факультета / Научные центры / Лицензионные пакеты Microsoft . Мы рады сообщить Вам, что в настоящее время на физическом факультете МГУ решен вопрос с лицезированным программным обеспечением фирмы Микрософт (за исключением пакета программ Microsoft Office) для обеспечения учебного и научного процессов. ... Информация о MSDN Academic Alliance фирмы Микрософт . ...

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• Как получить копию лицензионного пакета LabView для использования в
• Администрация
• Title

... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Universitetsky 13, Moscow 119899, Russia, shev@sai.msu.ru . ... 1.Sternberg State Astronomical Institute, 119899, Moscow, Russia. shev@sai.msu.ru . ... V.V.Shevchenko, Sternberg State Astronomical Institute, Moscow University, Moscow 119992, Russia, shev@sai.msu.ru . ... 119992 Moscow, Russia; . ... 2Sternberg Astronomical Institute, Moscow University, Moscow, 119992, Russia, . ... Moscow, 119992, Russia shev@sai.msu.ru . ...

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• Пугачева Светлана Георгиевна