... Fri, 18 Feb 2011 18:48:37 +0300 . ... allpy/structure.py geometrical_core/geometrical-core . ... allpy/structure.py . ... 1.9 + 1.10 + Monomers from this sequence get attribute pdb_ residue 1.11 1.12 ?TODO: global pdb_structures 1.13 1.14 @@ -66,7 +66,6 @@ 1.15 structure = get_structure(pdb_file, self.name) 1.16 chain = structure[pdb_model][pdb_ chain ] 1.17 self.pdb_ chain = chain 1.18 - self.pdb_residues = {} 1.19 pdb_ sequence = self.__class__.from_pdb_ chain ( ...

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... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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SC_rate . SC_rate offers a general method to evaluate the accuracy of protein sequence alignment with very low sequence identity. SC_rate is a Perl 5 program (available both in Perl and C binary format), which produces position specific reliability prediction for any protein sequence alignment. ... Perl Platforms . ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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... BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. ... The BLAST 2.0 search engine has been designed for optimal speed and sensitivity. ... Gapped BLAST and PSI-BLAST are useful search tools provided by the BLAST server (version 2.0) (Altschul et al., ... You can download blastcl3 form the anonymous FTP location ftp://ncbi.nlm.nih.gov/blast/network/netblast/ . ...

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Anchoring patterns and point mutations in pairwise alignments using AlignMe X-ray crystal structures have revealed that numerous membrane proteins, such as GPCRs or some secondary transporters, despite the lack of any detectable sequence similarity between them, still share very similar 3D structures. ... The novel feature allows the user to define any number of anchors with varying strength for improving the quality of pairwise alignments in challenging cases lacking notable sequence similarity. ...

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SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

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Scoring Matrices . Matrix Sequences Sequence Consisting of the first four Amino Acids in the Protein GYRB_ECOL: . ... Sequence Achieved by Substitution of the 2nd and 4th Amino Acid and Insertion between the 3d and 4th Amino Acid, in the Protein GYRB_ECOLI, to randomly chosen new amino acids: . ... Matrix Sequences Sequence Consisting of the First Nine Amino Acids of the Protein GYRB_ECOLI: . ... Sequence Consisting of 2nd, 3d, 7th, 8th and 9th Amino Acid Residues of the Protein GYRB_ECOLI: . ...

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• Множественное выравнивание.
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. SVETKA, a program for Analysis of Multiple Sequence Alignments . Helps (useful info) . Analyse your alignment . Interesting . links . Our Country . loads for a long time! . Our City . Our University . Our Institute . Our seminar . Our project . Name (optional) . Alignment . Nota Bene! .aln or .fasta format required!!! . Look here for comments . Tree (optional) . Nota Bene! Special scheme format required! . Look here for comments .

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Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Экологический Форум - Фундаментальная Экология : Предложения и замечания по сайту . Тема: Readily available over the market place . ... Oakley Sunglasses Polarized is actually a explanation in them for that truth why sport fishermen <a href=http://www.cheapestsunglassesonline.net/#140>cheap oakley sunglasses china</a> favor polarized sun shades! ... Переход на форум -- Выберите форум -- О сайте "Фундаментальная экология" - Предложения и замечания по сайту Научные семинары - Научные семинары . ...

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Peremennye Zvezdy ( Variable Stars ) 27 , No. 8, 2007 . ... Sternberg Astronomical Institute, 13, University Ave., Moscow 119992, Russia; e-mail: antipin@sai.msu.ru . Institute of Astronomy, Russian Academy of Sciences, 48, Pyatnitskaya Str., ... We present the discovery, photographic and V-band CCD observation of a new High Amplitude Delta Scuti star USNO-A2.0 0975-09853705. ... The photographic and -band CCD phased light curves of the newly discovered High Amplitude Delta Scuti star. ...

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Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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... Russian language courses: During academic year Summer courses Full-time Part-time Courses dates: from _____( day )____________( month )_____( year ) to ____( day )___________( month )______( year ) Information for visa support Citizenship __________________________________________(if more than one, please indicate them using comas) Place of birth ____________________________( country )_______________________________________ ____( ...

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Expands the parameters to the query that was used to display the page. ... format="..." format string for each entry, default $name=$value . ... encoding="..." the encoding to apply to parameter values; see ENCODE for a description of the available encodings. ... Name of the parameter . ... String value of the parameter. Multi-valued parameters will have a "row" for each value. $n or $n() . ... QUERYPARAMS{format="<input type='hidden' name='$name' value='$value' encoding="entity" />"}% . ...

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... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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... Previous message: [RU-NGI] CMS T2-RU-... in Morgue . ... FYI -------- Forwarded Message -------- Subject: [Noc-managers] New DPM release available in EPEL not compatible with SAM monitoring Date: Fri, 7 Nov 2014 18:36:47 +0100 From: Peter Solagna < peter.solagna at egi.eu > To: NGI Operations Centre managers < noc-managers at mailman.egi.eu > Dear colleagues, the DPM team released in EPEL a new version (v.1.8.9) which will publish the WebDav endpoint in the information system. ...

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... If some entries are missing, which might turn out later, add them in a way that the library remains downward compatible. (13aug97) XAW3D 3D widget library 1.3 . ... ASCII Art library 1.2 (by Hung-Chi Chu , aa.dll for XFree86, aa.dll.noX for non-X environments) . ... MPEG library 1.2.1 (by Hung-Chi Chu , DLL only ) . PNG library 1.0.2 (by Hung-Chi Chu , requires zlib , DLL only ) . TIFF library 3.4beta037 (by Hung-Chi Chu , requires zlib and jpeg , DLL only ) . ... Xpm 3.4k (by Hung-Chi Chu ) . ...

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. The value of the PATH variable is set so that you have access to the commands available on your system. You can use commands that are not on your path list by setting a new value for the PATH environment variable. Did You Know? .

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. The Linux System Administrators' Guide . Prev . Next . The source code and and other machine readable formats of this book can be found on the Internet via anonymous FTP at the Linux Documentation Project home page http://sunsite.unc.edu/LDP/ , or at the home page of this book at http://www.iki.fi/liw/linux/sag/ . Available are at least PostScript and TeX .DVI formats. Prev . Home . Next . Dedication . Introduction

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... Russian Pages . CDFE: Home Page . ... Numerical data, graphics, and bibliography . ... description] . Last updated: May 6th, 2014 . ... Last updated: June 15th, 2011 . ... Last updated: . ... Last updated: April 4th, 2015 . ... Last updated: February 25th, 2016 . ... Last updated: September 27th, 2011 . ... Photonuclear Data Index since 1955 . ... Last updated: September 15th, 2015 . ... Last updated: March 22th, 2010 . ... Last updated: March 19th, 2015 . ... Last updated: May 15th, 2002 . ...

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