... diff . ... Implemented & tested new markup API. ... line diff . 1.1 --- a/ allpy / base.py Fri Jul 15 13:57:56 2011 +0400 1.2 +++ b/ allpy / base.py Fri Jul 15 16:43:03 2011 +0400 1.3 @@ -101,7 +101,43 @@ 1.4 def __ne__( self , other): 1.5 return not ( self == other) 1.6 1.7 -class Sequence (list): 1.8 +class MarkupContainerMixin(object): 1.9 + Common functions for alignment and sequence for dealing with markups. 1.10 + 1.11 + 1.12 + def _ init ( ...

Еще в разделе: (Показать все результаты (>60127) - kodomo.fbb.msu.ru/ )

• allpy: d87129162eb4 allpy/markups.py
• allpy: d87129162eb4 test/usecase1.py
• allpy: df571a5233fb

SVETKA, a program for Analysis of Multiple Sequence Alignments . ... Analyse your alignment . ... Alignment . Nota Bene! .aln or .fasta format required!! Look here for comments . ... Nota Bene! Special scheme format required! ... Development of the program is supported by Ministry of Education and Science of the Russian Federation (State Contract No. ...

Еще в разделе: (Показать все результаты (>6987) - mouse.belozersky.msu.ru/ )

• Geometrical core

. SVETKA, a program for Analysis of Multiple Sequence Alignments . Helps (useful info) . Analyse your alignment . Interesting . links . Our Country . loads for a long time! . Our City . Our University . Our Institute . Our seminar . Our project . Name (optional) . Alignment . Nota Bene! .aln or .fasta format required!!! . Look here for comments . Tree (optional) . Nota Bene! Special scheme format required! . Look here for comments .

Еще в разделе: (Показать все результаты (>1337) - monkey.belozersky.msu.ru/ )

• SVETKA, a program for multiple sequence alignments analysis
• About this project
• ETS sequence conservation

IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

Еще в разделе: (Показать все результаты (>5151) - kodomo.cmm.msu.ru/ )

• Global and Local Alignment of A.A Sequences
• Множественное выравнивание.

... 2011/12/09 . ... added alignment merging . added parameter corresponding to the width of output alignment . fixed homologue searching for very long query sequences . ... Copyright 2010-2011 Yury Pekov ...

Еще в разделе: (Показать все результаты (>32) - mouse.genebee.msu.ru/ )

• ConClus
• Align tool for DNA-protein complexes
• Nhunt

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

Еще в разделе: (Показать все результаты (>3843) - lib.mexmat.ru/ )

• Lathrop R.H., Rogers Jr R.G., Smith T.F. - A Bayes-optimal sequence-structure
• Dubinko M. - XForms Essentials :: Электронная библиотека попечительского совета
• Korf I., Yandell M., Bedell J. - Blast (Basic Local Alignment Search Tool) ::

Application of evolutionary model in the evaluation of the quality of pair wise alignment of amino acid sequences Valery Polyanovsky, V. G. Tumanyan Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia ... : polyanovskyvo@mailfrom.ru, tuman@eimb.ru The purpose of the work is to develop a universal method for estimating the pairwise alignment quality depending on the evolutionary distance (degree of homology) between the ... REFERENCES 1. ...

Еще в разделе: (Показать все результаты (>239) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/4.pdf

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

Еще в разделе: (Показать все результаты (>144) - bioinf.fbb.msu.ru/ )

• Input Formats
• SDPpred
• SDPsite - Algorithm Format requirements

... Content Model: Optional list header (LH), followed by one or more list items (LI) . An ordered list typically is a numbered list of items. ... The numbering style is left to associated style sheets, e.g. whether nested lists contribute to a compound item number, e.g. "3.1.5", or whether numbers are rendered as arabic, upper or lower case roman numerals or using the numbering scheme appropriate to the language context. ... CLASS . ... The CLEAR attribute allows you to move down unconditionally: . ...

Еще в разделе: (Показать все результаты (>137) - comet.sai.msu.ru/ )

• Headings
• Table Rows
• List Item

AliGraf - GeneBee Graphical Alignment Help Type in a title for this session for you to remember. ... Type in an alignment algorith name (Genebee, ClustalW, Manual.. ... Even - all column space are colored; Sparse - every column is colored with respect to the column weight: less weight more space is left uncolored; Very sparse - more space is left uncolored. ... Also you can get a picture when only selected groups are colored. ... Group set depends on selected group type. ...

Еще в разделе: (Показать все результаты (>165) - www.genebee.msu.ru/ )

• AliComp - GeneBee Alignment Comparison Help
• Multiple alignment
• OUTPUT

Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

Еще в разделе: (Показать все результаты (>843) - www.sai.msu.su/ )

• SAL- Other Scientific Fields - Chemistry, Biology Related - DCSE
• SAL- Other Scientific Fields - Chemistry, Biology Related - ClustalW
• SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

Еще в разделе: (Показать все результаты (>547) - www.parallel.ru/ )

... Vertical alignment of cells and headers, set to "top" , "middle" , "bottom" or "baseline" . ... Table rules, set to "none" (no rules), "groups" (rules will appear between row groups and column groups only), "rows" (rules will appear between rows only), "cols" (rules will appear between columns only), "all" (rules will appear between all rows and columns). unspecified . ... Header cell text colour. "#ffffff" . ... Header cell background colour of a sorted column. the value of headerbg . ...

Еще в разделе: (Показать все результаты (>35448) - dualopt1.cmm.msu.ru/ )

• VarTABLE - TWiki - TWiki - (printable)
• VarTABLE - TWiki - TWiki

... Is only visible when cellspacing is larger than 1, or cellborder is 0 , or tablerules is none , otherwise the cell borders overlap the table border. unspecified . ... Table rules, set to "none" (no rules), "groups" (rules will appear between row groups and column groups only), "rows" (rules will appear between rows only), "cols" (rules will appear between columns only), "all" (rules will appear between all rows and columns). ... unspecified . ... This topic: System > Plugins > TablePlugin > VarTABLE...

Еще в разделе: (Показать все результаты (>4953) - wiki.cmc.msu.ru/ )

• MetaData < System < Foswiki

Next: mode and default Up: A dip Reference Previous: The if and goto . These commands help implement simple chat scripts in dip. send outputs its arguments to the serial line. It does not support variables, but understands all C-style backslash character sequences such as n and b. The tilde character () is used as an abbreviation for carriage return/newline. wait takes a word as an argument, and scans all input on the serial line until it recognizes this word. ...

Еще в разделе: (Показать все результаты (>270) - itpm.msu.su/ )

• Be Paranoid-- Call Sequence Checks
• mod_setenvif - Apache HTTP Server
• Changes between HTML 3.2 and HTML 4.0

... SGML . The text/html content type . In this section, we begin the specification of HTML 4.0, starting with the contract between authors, documents, users, and user agents. ... These recommendations are not normative and conformance with this specification does not depend on their realization. ... An HTML document is an SGML document that meets the constraints of this specification. ... A user is a person who interacts with a user agent to view, hear, or otherwise use a rendered HTML document. ...

Еще в разделе: (Показать все результаты (>739) - crydee.sai.msu.ru/ )

• Argument association
• Главная последовательность. The Main Sequence
• Standard Schoolhouse Rock Introduction Sequence

... METHOD . ... public interface AttributeSet . AttributeSet is an inquiry interface for a collection of Attributes. ... Tests if the Attribute identified by name is in this set. ... Retrieve the attribute associated with the specified name. ... Returns AttributeIterator for the elements. ... a new Array containing the elements of this set. public Attribute get (java.lang.String name) . ... If a different Attribute with the same name, was in the set, it is returned, otherwise null is returned. ...

Еще в разделе: (Показать все результаты (>67) - angel.cs.msu.su/ )

• Appendix B File Format Specification

... Accepting Arguments . ... PHP's implementation of variable arguments in fsockopen(). pval ** args [5]; int *sock=emalloc(sizeof(int)); int *sockp; int arg_count = ARG_COUNT (ht); int socketd = -1; unsigned char udp = 0; struct timeval timeout = { 60, 0 }; unsigned short portno; unsigned long conv; char *key = NULL; FLS_FETCH(); if ( arg_count 5 || arg_count 2 || zend_get_ parameters _array_ex( arg_count , ... Old way of retrieving arguments (deprecated) . ... Accessing Arguments ...

Еще в разделе: (Показать все результаты (>843) - oit.cmc.msu.ru/ )

• Часть XIII - Структурированные типы
• ImageGIF
• Apache module mod_setenvif

Изучение статистики наиболее длинной общей подпослеовательности двух случайных подпоследовательностей является одной из самых интересных и трудных задач вычислительной математической биологии. В докладе будут представлены результаты, касающиеся статистического распределения общих подпоследовательностей в упрощенном (некоррелированном) варианте модели, т.наз. модели Бернулли . ...

Еще в разделе: (Показать все результаты (>68) - polly.phys.msu.ru/ )

Additional data, Foswiki-generated or from forms , may be embedded in the topic text using META: macros . ... Core meta-data . ... To keep everything together in one place, meta-data (Foswiki-generated or from forms ) is embedded directly in topics, using special macros. ... Format is the same as for any other macros except that each meta-data macro must be on a line on its own. ... The name of the topic containing the form definition . ... This topic: System > WebHome > ReferenceManual > MetaData . ...

Еще в разделе: (Показать все результаты (>1816) - wiki.cs.msu.ru/ )

• VarENCODE < System < Foswiki