The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... file . ... file log . ... Tested and fixed Block.process(*, False, False) In this ivokation process only copies gap patterns, not sequence names. ... Previously this function assumed self is Alignment and that each monomer in self.sequences is visible in columns. ... 13 def __init__ ( self , file ): . ... 16 def save_string ( self , string , name , description = '' ): . ... 25 """Parse fasta file, remove spaces and newlines from sequence bodies. ... 46 def __init__ ( self , file , long_line = 70 ): ...

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• allpy: b556c96c6719 allpy/processors.py
• allpy: 670ae384aa37 allpy/fasta.py
• allpy: allpy/base.py history

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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• EEG feature extraction

... Dataplot is a free, public-domain, multi-platform software system for scientific visualization, statistical analysis, and non-linear modeling. The target Dataplot user is the researcher and analyst engaged in the characterization, modeling, visualization, analysis, monitoring, and optimization of scientific and engineering processes. See http://www.itl.nist.gov/div898/software/dataplot.html/summary.htm for a more complete description. ... Scientific Data Processing Visualization | ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - HMMER
• SAL- Computer Graphics, Images Signals - Processing Visualization - Pixies
• SAL- Scientific Data Processing Visualization - Libraries - EDA

... Laboratory of Mathematical Methods of Image Processing . ... Image analysis . ... Ringing effect . ... It can be efficiently used as a post-processing method for global image deblurring methods . ... Development of edge width estimation algorithm is important for image enhancement and image quality analysis methods. ... Ringing effect so known as Gibbs phenomenon in mathematical methods of image processing is the annoying effect in images and video appeared as rippling artifact near sharp edges. ...

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• View publication | Laboratory of Mathematical Methods of Image Processing
• Laboratory of Mathematical Methods of Image Processing
• Ringing analysis | Laboratory of Mathematical Methods of Image Processing

Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• FASTA format description
• Bioinformatics portal, Moscow State University

... Gambini R. - Relational description of the measurement process in quantum field theory . ... Название: Relational description of the measurement process in quantum field theory . ... Besides the obvious difficulty of dealing with the infinite degrees of freedom of the field theory, one has to analyse the restrictions imposed by causality concerning the allowed operations in a measurement process. ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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• Kuhn W., Grell M. - Jdf: Process Integration, Technology, Product Description
• Morters P., Moser R., Penrose M. - Analysis and stochastics of growth processes
• Percus J.K. - Mathematics of genome analysis :: Электронная библиотека

Key-words: rhythm, stress, syllable, rhythmic structure, syntagm, utterance, prosody, speech production, speech perception . ... In speech communication, RS are both units of speech production and speech perception. ... The research of speech rhythm in diachrony and synchrony consists of the analysis and the description of speech rhythmic units concerning Old Church Slavonic, Old Russian, Old High German in diachrony and Modern Russian, German, Czech and Bulgarian in synchrony. ...

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PHP Manual . ... 3.0.6 - 3.0.18 only, PHP 4 >= 4.0.0) xml_set_processing_instruction_handler -- Set up processing instruction (PI) handler . int xml_set_processing_instruction_handler ( int parser, string handler) . Sets the processing instruction (PI) handler function for the XML parser parser . ... target data ?> ... The function named by handler must accept three parameters: handler ( int parser, string target, string data) . ... xml_set_character_data_handler . ... xml_set_default_handler ...

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• xslt_process
• pfpro_process_raw
• pfpro_process

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• SVETKA, a program for multiple sequence alignments analysus
• SVETKA, a program for multiple sequence alignments analysis
• Inquiry information || Distances

NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...