... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• vanyushin_dept
• A.N. Belozersky Institute of physico-chemical biology MSU

... Геология >> Геотектоника | ... Добавить новое сообщение . ... Учебное пособие "Введение в тектонофизику". Гончаров М. А., Талицкий В. Г., Фролова Н. С. Ответ. ... Тезисы научной конференции ЛОМОНОСОВСКИЕ ЧТЕНИЯ, ноябрь 2011 года СЕКЦИЯ ГЕОЛОГИЯ: . ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• RNA Kinetics: Theory
• SDPsite - PF07978
• SDPsite - PF01206

... Войти в систему . ... Struct. and Dynamics , J. of Biomolecular Structure & Dynamics , J.Biom.Structure Dynamics , Journal of Biomolecular Structure & Dynamics . ... Khrameeva E.E. , Ulyanov S.V. , Gavrilov A.A., Shevelyov Y.Y., Gelfand M.S. , Razin S.V. в журнале Journal of Biomolecular Structure and Dynamics , издательство Adenine Press (United States) , том 33, с. 11-12 DOI . ... в журнале Journal of Biomolecular Structure and Dynamics , издательство Adenine Press (United States) , с. 1-11 DOI . ...

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• Lyakhov N.Z. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Voronov K.E. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического
• Pakhomov E.I. - сотрудник | ИСТИНА - Интеллектуальная Система Тематического

... Structure and properties of chimeric small heat shock proteins containing yellow fluorescent protein attached to their C-terminal ends. ... Recombinant chimeras of small heat shock proteins (sHsp) HspB1, HspB5, and HspB6 containing enhanced yellow fluorescent protein (EYFP) attached to their C-terminal ends were constructed and purified. Some properties of these chimeras were compared with the corresponding properties of the same chimeras containing EYFP attached to the N-terminal end of sHsp. ...

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• Creation of catalytically active particles from enzymes crosslinked with a
• Biochemistry Department of Moscow State University | Regulation of muscle
• Structure and properties of K141E mutant of small heat shock protein HSP22

... However, a competing process of micelle formation (see Figure) reduces efficiency of the copolymers as stabilizers. ... We have developed a theory of micelle formation in solution of AB and AC diblock copolymers. ... Despite a number of theoretical studies in the field of micelle formation in solutions of diblock copolymers with a charged block, the problem of equilibrium distribution of counterions was not considered properly. ... PSMTLab . ... Chair of Polymer and Crystal Physics; . ...

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• PSMTLab - Сотрудничество и Совместные проекты
• Polymers with Associating Groups (experiment + theory + computer experiment) -
• PSMTLab - Collaboration

... PbTe, SnTe, GeTe and their solid solutions are narrow-gap semiconductors widely used in infrared optoelectronics and for thermoelectric energy conversion. ... The present work is a continuation of recent EXAFS studies performed at the NSLS on GeTe, SnTe and PbTe crystals doped with high concentration of indium (10-35 at.% ... The studied samples were PbTe, SnTe and GeTe doped with 1.5-2% of indium along two sections (InTe and In 2 Te 3 ) of the phase diagrams. ... Results of data analysis. ...

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• Physics of Semiconductors division: List of courses
• An EXAFS study of the local structure of the PbxSn1-xS solid solution
• Time evolution of an incommensurate structure of Rb2ZnCl4 in uniaxial

... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Octoshell: Lightweight and Innovative Cluster Management System . ... AREA: Inorganic Chemistry . ... Moscow State Uiversity . ... USAGE: Fundamental science - inorganic chemistry, solid state chemistry, materials science . AREA: Inorganic Chemistry, Physical Chemistry, Structure and Dynamics of Atomic-Molecular Systems . ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: High Molecular Weight Compounds | Moscow University
• APPLICATIONS: Astronomy | Moscow University Supercomputing Center
• APPLICATIONS: Structure and Dynamics of Atomic-Molecular Systems | Moscow

... Traditional interactive representation of the genome in a text format (FASTA, FASTQ) is not always convenient for the analysis of molecular omics data. In particular, information on a reference genome is available via the Internet poorly structured and do not provide a comprehensive automatic analysis of a set of genes, transcripts, exons, introns and thus excluded aggregations of data across the genome. ... Note that it always remains in the DB hyperlink on the primary interactive data portals. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/23.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/17.pdf

... Synthesis, Crystal and Electronic Structure of Subvalent Metal Compounds . Head of the Group: Prof. B.A.Popovkin . Group Staff . ... Main research interests - design and synthesis of new inorganic compounds with isolated cluster fragments or low-dimensional extended systems of homo- or heteronuclear metal-metal bonds; the search for new compounds featuring drastic anisotropy of physical properties; determination of correlations between crystal and electronic structures of such compounds. ...

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• Diploma
• Division Colloquia - Inorganic Chemistry Division - Chemistry Department -
• PhDs (since 1995):

... Data . ... Solar energetic particles . ... Nucleon . ... Particle spectra at LEO . ... Overview ] [ Documentation ] [ SEP Events ] [ SEP Model ] . ... 1.2 High-energy heavy ions (Z = 6, 7, 8, 10, 12, 14, 16, and 26) by ACE spacecraft (SIS instrument) data are selected from: . ... The SEP events were selected by GOES-8 4th channel (15-40 MeV) data (see Fig.1). ... E тАУ ionтАЩs kinetic energy in MeV/nucl; Moc2 =938 MeV тАУ nucleon rest energy; †Я=v/c тАУ particleтАЩs relative velocity. ...

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• Scientific services - Space monitoring data center
• COHO project - Space monitoring data center
• Space monitoring data center INTERHELIOS PROJECT

... Faculty of Physics . M.V.Lomonosov Moscow State University . 7 (495) 939-16-82 info@physics.msu.ru . ... Research Centers . ... Search Faculties Staff . ... Research . ... Education research . ... Research Highlights of the Year . Research Highlights Archive . ... 21.08.2003 XIth Lomonosov Conference on . Elementary Particle Physics . ... Faculty of Physics, M.V.Lomonosov Moscow State University . Moscow, Russia . WEB-site of the conference . ... Faculty of Physics, 2016 . ...

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• Title
• DIVISIONS AND CHAIRS
• Обеспечение учебного и научного процессов на факультете лицензионным

... The Field of Radiative Forces and the Acoustic Streaming in a Liquid Layer on a Solid Half Space V. A. Gusev and O. V. Rudenko Faculty of Physics, Moscow State University, Moscow, 119991 Russia e mail: vgusev@bk.ru Received May 21, 2010 Abstract--The acoustic field and the field of radiative forces that are formed in a liquid layer on a solid sub strate are calculated for the case of wave propagation along the interface. ... Let us consider the field in the liquid layer ­h < z < 0. ...

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• http://acoustics.phys.msu.su/teachers/gusev_files/nano2.pdf
• A.V.Shanin

Three-waves interactions of surface defect-deformational waves and their role in selforganization of micro- and nanostructures under laser action on solids Diploma thesis abstract Selforganization of nano and microstrutures of the surface relief under the action of external energy (laser and ion) beams is considered as an instability of quasistatic surface defectdeformational (DD) waves formed by coupled quasistatic Lamb and Rayleigh acoustic waves and defect concentration waves. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2012/Tashchilina_Zheltikov_en.pdf
• Грант подробно

Title Author Key words The Other as a margin and as a marginal experience in the process of sociocultural identity formation L.Ya. ... The author singles out four basic dimensions of identity phenomenon in the frame of the proposed approach. These dimensions are located in the range between oppositional notions: individual ­ collective, internal ­ external, content ­ boundary, static nature ­ dynamic nature. ... Also the functions of the Other in the process of identity formation are revealed. ...

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• http://www.socio.msu.ru/vestnik/eng/archive/2015/3/03.pdf
• http://www.socio.msu.ru/vestnik/eng/archive/2014/4/03.pdf

DISCUS . DISCUS (DIffuse SCattering and defect strUcture Simulation) is a program written to simulate crystal structures and to calculate the corresponding Fourier transform. ... It can, however, be equally well used for the simulation of perfect structures, of non crystalline materials and can be used as a very efficient tool in the teaching of diffraction physics. ... User Comments: . ... SAL Home | Other Scientific Fields | Physics Astronomy . Comments? SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Physics Astronomy
• SAL- Programming - Languages Compilers - ADAMO
• SAL- Scientific Data Processing Visualization - Software Packages - EnSight

... To remain stable, tmRNA associates with Small Protein B ( SmpB ). ... Chemical probing of tmRNA structure in ribosomal complexes blocked at different stages of trans-translation allowed us to follow the structural changes starting from early steps of tmRNA passage, with the TLD in tmRNA at the ribosomal E-site, up to the termination step of trans-translation. ... The details of the models are available at http://rnp.genebee.msu.ru/bin/view/Projects/TmrnaEnglish . ... tmrna_4.pdb . ...

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• TmrnaEnglish - Projects - TWiki

... Partitioning of Cartesian structures . ... MPI_CART_SUB(comm, remain_dims, newcomm) . IN comm] communicator with cartesian structure (handle) . ... int MPI_Cart_sub(MPI_Comm comm, int *remain_dims, MPI_Comm *newcomm) . ... MPI_CART_SUB can be used to partition the communicator group into subgroups that form lower-dimensional cartesian subgrids, and to build for each subgroup a communicator with the associated subgrid cartesian topology. ... MPI_CART_SUB(comm, remain_dims, comm_new) . ... Центры . ...

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• Cartesian Shift Coordinates | PARALLEL.RU - Информационно-аналитический центр
• Examples | PARALLEL.RU - Информационно-аналитический центр по параллельным
• Low-level topology functions | PARALLEL.RU - Информационно-аналитический центр

... Микс 193 A 131 A 171 A 211 A 304 A Корона Магнитограмма . 211 + 193 + 171 . Description . ... LASCO (Large Angle and Spectrometric Coronagraph)- инструмент на космическом аппарате SOHO, поставляющий изображения солнечной короны, на которых свет, идущий непосредственно от Солнца, заблокирован с помощью искусственного затмения, создаваемого самим аппаратом. ... The form and the location of the magnetospheric boundary are defined by pressure balance of the solar wind and geomagnetic field. ...

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• SWX - Магнитосфера

Experimental Collaborations . Leading particles" -- E852 -- CMS -- "The Hall D Project" . Scintillation Magnetic Spectrometer MSU": experimental setup . ... fixed target experiment to trace the evolution of transient non-equilibrium hadronic states, as they penetrate through the nuclear matter . an experiment in the polarized proton beam to investigate spin phenomena in the proton-nucleus interactions . ... Participants from Hadronic Interactions Laboratory: . ...

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• ASI "Structure and Dynamics of Elementary Matter", September 21 - October 2,