... This form lets you to produce a list of hydrophobic clusters in a PDB file specified by user. Enter a 4-letter PDB code, e.g.: 1apl : . Search clusters: . ... between chains . Contacts between chains . Set #1 . ... Enter your e-mail here (optional): . ... List of atoms Strict Wide . Chains filter (1-20:A) . Show clusters not smaller than atoms . User data file in PDB format . ...

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• HF clusters: algorithm

log . ... Sat, 26 Mar 2011 02:18:36 +0300 . boris (kodomo) . ... Daniil Alexeyevsky . ... Typo in allpy.fileio.write_strings . ... Fri, 25 Mar 2011 23:12:21 +0300 . ... Automated merge with ssh://kodomo/allpy . Thu, 17 Mar 2011 17:48:37 +0300 . ... Wed, 16 Mar 2011 22:50:50 +0300 . ... Mon, 28 Feb 2011 22:40:16 +0300 . ... allpy.processors: make temporary files named . Tue, 01 Mar 2011 00:17:13 +0300 . boris . ... Updated allpy/data/codes.py from fresh components.cif . ...

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• allpy: 8a81996f8bda
• allpy: allpy/config.py history

PARAMETERS OF THE SOLAR CONVECTION ZONE IN EVOLUTIONARY AND SEISMIC MODELS VLADIMIR A. BATURIN Queen Mary & Westfield College, Mile End Road, London E1 4NS, UK AND SERGEY V. AYUKOV Sternberg Astronomical Institute, Moscow 119899, Russia Abstract. ... Entropy as a parameter of solar structure The specific entropy (s) and the helium abundance (Y ), chief parameters of the solar convection zone, are still poorly determined. ... 1996. ... 0:3) does not affect convection zone entropy. ...

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• Notation
• Dos32Profile API
• Heliophysics, Internal structure and seismology

... 3D magnetosphere . ... Data . ... Magnetosphere . ... Magnetic field at the selected point Module of the Magnetic field distribution along Sun-Earth line Noon-Midnight magnetosphere structure . ... Point coordinates, where magnetic field will be calculated: . ... Magnetic field at MD outer edge . ... Magnetic field at TC inner edge . ... Distance to external edge of MD . ... Distance to inner edge of MD . ... Magnetopause stand-off distance . ... Distance to inner edge of geotail current sheet . ...

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• SWX - Космическая погода

... CompHEP Models. ... CompHEP is based on an idea of the physical model. ComHEP Models are very simular to physical models in high energy physics, like Standards Model or MSSM. ... Two of them are versions of the Standard Model (SU(3)xSU(2)xU(1)) in the unitary and t'Hooft - Feynman gauges. ... Standard Model in Feynman gauge . ... This output can be written in LaTeX format and in the form of CompHEP model files, which allows one to start calculations of processes in the new physical model. ...

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• extra:main [CompHEP]

... Next: Plane tab Up: Client Previous: Connection to a Server Contents Index . Figure 2.4: Scan parameters. STM mode of operation. ... AFM mode of operation. ... All scan parameters can be configures in Parameters window (pic. ... Client part of `` FemtoScan '' software allows to control microscope operating in three different scanning modes - tunneling mode(STM), atomic-force mode (AFM) and resonance atomic-force (RAFM). ... It(Z) tab (STM mode), F(Z) tab (AFM mode), D(Z) tab (RAFM mode). ...

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• Parameters of 3D Images
• Plane tab
• DSP board program

... High Brightness RTM . ... Fig.1a: 70-MeV pulsed race-track microtron . Many applications require compact, inexpensive and efficient source of electron beam in energy range 10-100 MeV. ... Beam is focused by accelerating structure, which acts as RF quadrupole singlet, quadrupole triplets (12) installed at the even orbits return path and by electromagnet quadrupole singlet (9) installed at common axis. ... Fig.1b: 70-MeV RTM Schematic . ... Energy gain: 4.8 MeV / orbit . Orbits: 14 . ...

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... PHP 3 <= 3.0.18, PHP 4 >= 4.0.0) imap_fetchstructure -- Read the structure of a particular message . object imap_fetchstructure ( int imap_stream, int msg_number [, int flags]) . ... The returned object includes the envelope, internal date, size, flags and body structure along with a similar object for each mime attachement. ... TRUE if there is a subtype string . ... An array of objects identical in structure to the top-level object, each of which corresponds to a MIME body part. ...

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• Dealing with a Variable Number of Arguments/Optional Parameters
• Assuring Write Safety for Other Parameters
• xml_parse_into_struct

... Publications . ... Number of publications 0 . ... Publication type . ... Borisov A. V. , Kazakov A. O. , Sataev I. R. The Reversal and Chaotic Attractor in the Nonholonomic Model of Chaplygin?s Top . Regular and Chaotic Dynamics, 2014, vol. 19, no. 6, pp. ... Borisov A. V., Kazakov A. O., Sataev I. R., Regular and Chaotic Attractors in the Nonholonomic Model of Chapygin's ball, Russian Journal of Nonlinear Dynamics, 2014, vol. 10, no. 3, pp. ... Institute of Computer Science Izhevsk, 2005 - 2016 . ...

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• Institute of Computer Sciences - Conferences - International Conference "Metric
• Institute of Computer Sciences - Conferences

XLOGP/PLOGP . Partition coefficient in octanol/water (logP) has long been used to parameterizing the hydrophobicity character in QSAR studies. XLOGP is a method which can calculate the logP value for an organic compound from its topological structure. ... The first part, plogp, calculates the 1-octonal/water partition coefficients of short peptides. ... http://mdl.ipc.pku.edu.cn/drug_design/work/xlogp.html . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• Zen: SkyPixelization
• SAL- Other Scientific Fields - Physics Astronomy - XMPA/ZORTEP
• SAL- Other Scientific Fields - Misc - ACPLT/KS

The purpose of the space-physics lab exercises is to introduce the students to the methods of the measurements, to the modern conception of near-Earth space structure and the physical processes and phenomena occured in it. ... At present the reasearches and the teachers of the University and of other institutes participating in the project continue development of the the special space-physics lab exercises, and they are interested in your ideas concerning the future exercises. ...

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... PROJECT 01-0172 . Dynamic processes in amorphous glassy polymers and their effect on gas transport: theoretical, experimental and simulation studies . ... The main goal of this Project is to study a influence of chemical structure of the polymer unit on the gas transport parameters by the methods of the conformational analysis , method Monte Carlo and molecular-dynamic method. ... Theoretical and simulation methods will be used for study of gas transport of glassy polymers . ...

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• Conformational analysis group - Chair of Polymer and Crystal Physics
• Practicums - Chair of Polymer and Crystal Physics
• General Approaches to Statistical Thermodynamics of Copolymers of Practical

diploma thesis abstract of Zjabko I.A. Anisotropy of a parameter of absorption in thin films of polymer polyparaphenilvenylene and donor-acceptor compositions on its basis In the present work are investigated thin a film of the connected polymer of a soluble derivative polyparaphenilvenylene (PPV). ... The received experimental curves are approximated by theoretical dependence and thus required values of optical constants are determined. ...

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• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2010/Yagnyatinskiy_Konovko_en.pdf
• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2006/Kostryukov_Tunkin_en.pdf
• http://ofvp.phys.msu.ru/en/science_education/diploma/annot/2011/Dmitruk_Kandidov_en.pdf

Proline puckering. Prolines with funny puckers: Date= 2011-05-23 14:37:27 Puckering amplitudes for all PRO residues are within normal ranges. ... Puckering parameters were calculated by the method of Cremer and Pople [REF]. Normal PRO rings approximately show a so-called envelope conformation with the C-gamma atom above the plane of the ring (phi=+72 degrees), or a half-chair conformation with C-gamma below and C-beta above the plane of the ring (phi=-90 degrees). ...

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• http://kodomo.cmm.msu.ru/~is_rusinov/projects/MolDynam/ModellerFiles/pp5.txt
• http://kodomo.cmm.msu.ru/~is_rusinov/projects/MolDynam/ModellerFiles/pp1.txt
• http://kodomo.cmm.msu.ru/~is_rusinov/projects/MolDynam/ModellerFiles/pp2.txt

... Data . ... Models . ... Paraboloid model . ... Dynamic paraboloid model (A2000) allows to calculate the variations of magnetic field of each magnetospheric large scale current systems by empirical data during quite and disturbed periods. ... The IMF penetrated into the magnetosphere as well as field-aligned currents magnetic field are included in the total magnetospheric magnetic field. ... bb(2,i) - ring current magnetic field; . ... BD is the geomagnetic dipole magnetic field at the Earth's...

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• Space monitoring data center
• APEV service - Space monitoring data center
• COSRAD model - Space monitoring data center

... 2004). Our attempt to increase the yield in the reaction of O-methylation (Albov, Rybakov et al., 2004), using excess methyl iodide, caused the subsequent methylation at the N atom and led to the title compound, (2) (Fig. ... C10H13NO DOI: 10.1107/S1600536804010025 Acta Cryst. ... ORTEP 3 (Farrugia, 1997) view of (2), with the atom numbering scheme. ... Acta Cryst. ... Farrugia, L. J. (1997). ... Cryst. ... In (2), H atoms were included in calculated positions and re®ned as riding atoms. ...

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• http://www.chem.msu.ru/eng/misc/babaev/papers/098e.pdf
• http://www.chem.msu.ru/eng/misc/babaev/papers/100e.pdf
• http://www.chem.msu.ru/eng/misc/babaev/papers/090e.pdf

... Therefore two component approach is needed (GVDM /soft component/+QCD /hard component/). ... In the models with "soft-wall" square of meson mass is proportional to the number of meson . ... 14 Energy dependence of cross section (soft component) and hard component For GVDM (soft) component the energy dependence was chosen in the Regge-type form 1.29 s p ( s ) = 114 * + s 1600 0.06 . ... F2 ( x, Q 2 ) Particle Data Group, 2007 Blue line is the soft (GVDM) component. ...

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• http://nuclphys.sinp.msu.ru/conf/lpp14/210809/Panov.pdf
• http://nuclphys.sinp.msu.ru/conf/epp10/Lukin.pdf
• The European X- Ray Free-Electron Laser

... Perturbation Theory has a long tradition. ... The stability of an equilibrium (or periodic) state of a system depends in the first instance on the eigenvalues of the system linearized about that state. ... After an introductory chapter on stability theory, a long Chapter 2 deals with bifurcation analysis of eigenvalues of matrices depending on several parameters: this is the core of the book on which most of the rest depends. ...

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• Curriculum Vitae of Dr Alexei A

... Academic . ... Academic Departments . ... Partners . Conferences . ... All partners . ... The international academic conference . ETHNIC PRESS GENESIS, STRUCTURE, DEVELOPMENT TRENDS . ... Conference proceedings will be published at the endљ . of the Conference as a collection of scientific articles and available in electronicљ . ... Organizing Committee address: Department of Journalism, Room 325 A, 3d floor, Main Academic Building, 42 Kulakovskogo St., Yakutsk, 677000. ...

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О лаборатории . ... Лаборатория теоретической биофизики . ... OPLS-AA topology generation is a very complex task because of huge amount of the atomtypes described this force field. ... We use OPLS-AA with some includings; ?includings? are overlays on the standart GROMACS forcefield files. ... All-atom automatic OPLS-AA topology generator . ... comcon1 in All-atom automatic OPLS-AA topology? . ... OPLS-AA? in All-atom automatic OPLS-AA topology? ... 2011 ERG Research Group . ...

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• Using RESP with GAMESS-US and Firefly (PC-GAMESS) ERG Research Group:
• All-atom automatic OPLS-AA topology generator ERG Research Group: Лаборатория