. A program for alignment of structures of DNA-protein complexes . Home . Feedback . Help . About . Input PDB code of the first complex: and chain of the protein (optional): . Input PDB code of the second complex: and chain of the protein (optional): . If you get stuck with program input, try example data and click Align! Example data . 2016

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• ConClus
• StructAlign help

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• Selected publications of Vasilevskaya, Valentina Vladimirovna
• General Approaches to Statistical Thermodynamics of Copolymers of Practical
• Scientific Work

... Resources . ... Eurasian Center . for Food Security . Home About About Eurasian Center for Food Security . ... Our mission: ?аPromote and coordinate collective actions for strengthening food security in Eurasia through research and development. ... The ECFS Mission should be creating conditions for the development and implementation of a coherent agricultural policy that ensures soil fertility, conservation of natural resources and ensuring food security of the Eurasian region. ...

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• Resources | ECFS

Elena V. Stenina . ... Department of Electrochemistry . ... Thesis: "Two-dimensional condensation of organic substances at electrode/solution interface and its role in electrochemical kinetics" . ... Junior Scientific Researcher, Senior Teacher, Senior Scientific Researcher, Leading Scientific Researcher, Department of Electrochemistry, Chemistry Faculty of Lomonosov Moscow State University . ... Investigation of adsorption at electrode/ solution interface and influence on electrochemical reactions". ...

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• Liana N. Sviridova:CV
• Laboratory of Electrical Double Layer and Electrode Kinetics
• Oleg A. Petrii

... Institutes of Chernogolovka . The largest of all the scientific institutions of the center is the Institute of Chemical Physics in Chernogolovka , where fundamental problems of chemical physics are studied: kinetics and mechanisms of chemical and biological processes; processes of combustion, explosion, and polymerization; and mechanisms of elementary reactions involving high energy particles. ... Developments and Technologies . ...

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CONTROL OF THE CHAOTIC OSCILLATIONS IN THE EXCITABLE MEDIUM IN ONE HETEROGENOUS CATALYTIC REACTION Kurkina E., Selezneva J. Mendeleev's University of Chemical Technologies of Russia, Miusskaya sq., ... Unpredictable behavior of the chaotic oscillations, ambiguity of ways of the process to end, high opportunity of realization the negative results leave us no choice but to look for the methods of controlling chaos. ... These reactions develop the chaotic behavior in definite conditions. ...

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• http://www.mce.biophys.msu.ru/archive/doc18846/doc.pdf
• http://www.mce.biophys.msu.ru/archive/doc27176/eng.pdf
• MCE-2016

... Centrosome and microtubules system, cell motility and polarization. ... Alieva I B, Vorobjev I A. Vertebrate primary cilia: a sensory part of centrosomal complex in tissue cells, but a "sleeping beauty" in cultured cells? Cell Biol Int. 2004;28(2):139-50. Vorobjev I A, Alieva I B, Grigoriev I S, Borisy G G. Microtubule dynamics in living cells: direct analysis in the internal cytoplasm. Cell Biol Int. 2003;27(3):293-4. Chernobel'skaia OA, Grigor'ev IS, Alieva IB, Vorob'ev IA. ...

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• Алиева Ирина
• publications
• publications2

... Laboratory has collection of the bird acoustic signals tape-recordings (more than of 150 species). ... The laboratory collection of hamsters includes 16 species (out of 19 distributed in the Palearctic). ... Thus, we have got an opportunity to conduct comparative analysis of behavior, chemical communication both in phylogenetically close and distant species. ... A comparative study of both optical and acoustic communicative signals in all six swan species of the world fauna has been accomplished. ...

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• Laboratories: Laboratory for Behaviour of Lower Vertebrates: Goals and Tasks
• Laboratories: Laboratory for behavior and behavior ecology of mammals: Goals
• Laboratories: Laboratory for Soil Ecological Functions: Goals and Tasks

Research Center for Environment and Health (GSF)#FE 75184, BA 31/139166/02/U, 2002-2004, PI: Perminova I.V. Humic substances as natural adaptogens: evaluation of the biological effects and their relationship to the molecular properties . ... to establish a linkage between the structure, molecular properties and adaptogenic activity of HS, and conclude on the most prospective source and treatment technique for obtaining the humic materials of the specific activity . ...

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• MGUMUS -- Irina V. Perminova
• MGUMUS -- Researches

... Reduction of detailed schemes for chemical transformations of formaldehyde and hydrogen oxidation reactions based on a sensitivity analysis of a mathematical model" . ... The results of simulation are compared in the case of using a number of reduced and detailed schemes for formaldehyde and hydrogen oxidation reactions. Keywords: sensitivity analysis, mathematical model of reaction, formaldehyde oxidation reaction, hydrogen oxidation reaction, reduction of chemical reaction mechanisms. ...

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• "A lattice Monte Carlo model for nanostructure formation analysis"
• "Optimization algorithms for facet models and methods of their network...
• "A software complex for the analysis and visualization of monitoring and

... PbTe, SnTe, GeTe and their solid solutions are narrow-gap semiconductors widely used in infrared optoelectronics and for thermoelectric energy conversion. ... The present work is a continuation of recent EXAFS studies performed at the NSLS on GeTe, SnTe and PbTe crystals doped with high concentration of indium (10-35 at.% ... The studied samples were PbTe, SnTe and GeTe doped with 1.5-2% of indium along two sections (InTe and In 2 Te 3 ) of the phase diagrams. ... Results of data analysis. ...

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• Theory of electronic properties of disordered semiconductors and systems with
• First-principles calculations of physical properties of crystals

... Applications of Molecular Mechanics to Metal Complexes" . ... Molecular mechanics study of the mixed-ligand lanthanide complexes using Gillespie-Kepert model . ... Within MM-GK, the same parameters are applicable to complexes of different coordination numbers/polyhedra. ... Gillespie-Kepert model . ... Using derived computational parameters, we calculated the geometry of 39 lanthanide ion nonaaqua complexes, 6 octaaqua complexes and 18 beta- diketonate and aqua-beta-diketonate complexes. ...

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• analyt
• Moscow State University: Analytical Chemistry Division

Moscow State University Belozersky Institute of Physico-Chemical Biology . Department of Electron Microscopy is a sub-division of A.N. Belozersky Institute of Physico-Chemical Biology . ... We are interested of how eukaryotic cell is organized, formed and functioned. Since A.N. Belozersky Institute of Physico-Chemical Biology is one of the scientific departments of Moscow State University ? ... Understanding the metaphase chromosome architecture remains a basic challenge in cell biology. ...

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... In one the conformational study of viral RNAs was performed. ... Movement protein (MP) molecules were found to be distributed along the chain of RNA and the structure of MP?RNA complexes depended on the molar MP:RNA ratios at which the complexes were formed. ... The study of bacterial cell was done in the second project [1,5,6]. ... The functionalization of tips was monitored by fluorescent microscopy and the force measurements with AFM. ... The kinetics of DNA adsorption to APS-mica was studied. ...

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• Evgeny Menshikov
• Interests
• List of full papers:

Biochemical analysis of the metabolism of small rodents living in different radioecological conditions . ... The initial differences of metabolism and their modification under the conditions of radioactive pollution of the environment are presented on the basis of the complex of biochemical parameters of two ecologically different species of small rodents ( Apodemus uralensis and Myodes rutilus ). ...

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• Russian Journal of Theriology
• Specific functional forms of behavior in pine marten Martes martes, based on
• Vocal activity and acoustic structure of the rutting calls of Siberian wapiti

... X-ray structure analysis of hollow reconstituted beta-subunit capsids. ... The lumazine synthase/riboflavin synthase complex of Bacillus subtilis consists of an icosahedral capsid of 60 beta subunits enclosing a triplet of alpha subunits. ... Biol. 203, 1045-1070]. beta subunits were isolated after denaturation of the alpha 3 beta 60 complex and were subsequently reconstituted in a ligand-driven reaction yielding artifactual, hollow beta 60 capsids with icosahedral symmetry. ...

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• Escherichia coli AspC
• EcoCyc Query Results
• Состав записи банка PDB

... The factors that play the key role in complex formation are as follows: the rate of protein diffusion to the docking site; long-range electrostatic interactions between protein surfaces, geometric and chemical complementarity of binding areas; molecular mobility at the proteinґprotein interphase, hydrogen bonds, Van der Waals interactions, hydrophobic interactions, and salt bridges. ... Three-dimensional protein molecules are constructed on the basis of data extracted from the Protein Data Bank. ...

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• http://www.library.biophys.msu.ru/PDF/80521.pdf
• http://www.library.biophys.msu.ru/PDF/80552.pdf
• Fluorescence induction curves registered from individual microalgae cenobiums

О лаборатории . ... Лаборатория теоретической биофизики . Published in Февраль 8th, 2016 . Posted by comcon1 in Без рубрики . ... ERG group members work with different types of molecules and consequently added new atomtypes into classical OPLS-AA distributed with GROMACS. Now the ERG patch of OPLS-AA force field is published at bitbucket as a repository. continue reading.. ... Published in Май 19th, 2015 . ... comcon1 in All-atom automatic OPLS-AA topology? . ... 2014 ERG Research Group . ...

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• gromacs ERG Research Group: Лаборатория теоретической биофизики
• Building and plotting Fukui function with FireFly and PyMol ERG Research Group:
• topology ERG Research Group: Лаборатория теоретической биофизики

... Now let us consider that damping or amplitude of the signal like a natural index of a hypothetical inequality or mean between the action and reaction, or the kinetic and the potential energy of the system. The time between the action and the reaction must be different from zero. ... We can describe this behaviour in its simpler form by the oscillation of a balance with inertiality or sensitivity, that is to say, with a time of reaction for the operations of adding or removing weights. ...

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• Russian Interdisciplinary Temporology Seminar
• СИММЕТРИЧНЫЕ И АСИММЕТРИЧНЫЕ ВРЕМЕННЫЕ ПРОЦЕССЫ В ЖИВЫХ ОРГАНИЗМАХ
• Laboratory-chair of causal mechanics

... A comparative study of thermodynamic for both natural and artificial RNA/DNA ґ protein complexes would establish bases for a specificity of complex formation. In particular, we have shown that aptamers could be used for a direct measuring of thrombin enzymatic activity in a solution. D 2002 Published by Elsevier Science B.V. Keywords: RNA/DNA ґ protein interactions; Ribosome; SELEX; RNA/DNA aptamers; Thrombin; Enzymatic activity 1. ... The aptamer binds to the protein with Kd = 0.5 nM. ...

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• http://rnp-group.genebee.msu.ru/pages/pdf/nar2004.pdf
• http://rnp-group.genebee.msu.ru/pages/pdf/biochem2003.pdf
• http://rnp-group.genebee.msu.ru/pages/pdf/biochem2002_1.pdf