Protein 3D architectures and structural motifs: automated annotation E.A. Aksianov1, A.V. Alexeevski 1 2 1,2 Belozersky Institute, Lomonosov Moscow State University, Leninskie Gori 1, Moscow, Russia Scientific Research Institute for System Studies (NIISI RAN), Moscow, Russia evaksianov@gmail.com, aba@belozersky.msu.ru Description of a protein 3D structure in terms of structural domains, architecture, topology and structural motifs is a hard problem. ... The core is extended by small -sheet (unit_3). ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/143.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/202.pdf

Described below are two methods for preparing input files with basis sets and ECPs which are not currently built in. ... Put basis sets and ECPs in directories (called here def2_svp_BAS and def2_ecp_ECP but you can call them whatever you want) and copy them to the Firefly directory. ... Both methods can also be used for preparing gamess (us) files - the check runs may not terminate properly due to certain keywords, but a useable file called 'input' is normally generated. ...

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• Firefly documentation - state-specific gradients for state-averaged MCSCF and
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You are here: Foswiki > System Web > Macros > VarENCODE (31 Oct 2010, ProjectContributor ) E dit A ttach . Encode character sequences in "string" , by mapping characters (or sequences of characters) to an alternative character (or sequence of characters). ... comma-separated list of replacement tokens. The elements in this list match 1:1 with the elements in the old list. ... An empty element in the new list will result in the corresponding token in the old list being deleted from the string. ...

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• JQueryLoader < System < Foswiki

. Nhunt: program for nucleic acid sequence similarity search . Download . User manual . Application examples . License . News . About . Authors publications . Contacts . Web interface . At present you can download poster from MCCMB'11 conference and my term work (in Russian) with description of main program algorithms. Funding: Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). Copyright 2010-2011 Yury Pekov

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• Align tool for DNA-protein complexes

... Now let us consider that damping or amplitude of the signal like a natural index of a hypothetical inequality or mean between the action and reaction, or the kinetic and the potential energy of the system. The time between the action and the reaction must be different from zero. ... We can describe this behaviour in its simpler form by the oscillation of a balance with inertiality or sensitivity, that is to say, with a time of reaction for the operations of adding or removing weights. ...

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• Time Structure of the World
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... Publications . ... SPDC Laboratory . Quantum Electronics Chair . ... Error: You currently have Javascript disabled. ... On the passive probing of fiber optic quantum communication channels?, ... Such a backward emission can present a potential serious problem for the stability of fiber optic quantum cryptography systems against passive probing. ... Download [ help ]: . ... All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. ...

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DESCRIPTION OF THE 3d SOLAR EVENT MAP . ... This date coincides with central day of the map marked by solid vertical line (in the present example - 13 July, 2000). ... The following phenomena are presented on the map: coronal holes, filaments, solar flares and the distribution of the solar magnetic field on the source surface (2.5 solar radii). The coronal holes are drawn by irregular solid curves with colors according to the day of observation (light blue, orange and violet). ...

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• 1d Map Description

... A hybrid heuristic parallel method of global optimization" . ... A hybrid heuristic parallel method for solving of complicated global optimization problems is proposed. ... The method is compared with 21 modern methods of global optimization and with a genetic algorithm using 28 test objective functions of 50 variables. Keywords: global optimization, heuristic methods, neural networks, parallel computing, C++, MPI. ...

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• "A method of automatic constructing a model of a parallel program in terms of
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... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• BLAST 2.0 Release Notes
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• GeneBee BLAST 2.2.22+ Services Help

.

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... CompHEP Models. ... CompHEP is based on an idea of the physical model. ComHEP Models are very simular to physical models in high energy physics, like Standards Model or MSSM. ... Two of them are versions of the Standard Model (SU(3)xSU(2)xU(1)) in the unitary and t'Hooft - Feynman gauges. ... Standard Model in Feynman gauge . ... This output can be written in LaTeX format and in the form of CompHEP model files, which allows one to start calculations of processes in the new physical model. ...

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• news [CompHEP]
• extra:main [CompHEP]

NMW survey overview . Access image archive . ... The New Milky Way survey aims to detect bright (V<13.5) optical transients near the Galactic plane using an automated wide-field (8x6 deg.) system capable of surveying the whole Milky Way area visible from the observing site in one night. ... All images obtained during the transient search survey are available online (please use the image archive access form ). ... Images per field: . ... Images per night: . ... Milky Way imaging time: . ...

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... A new image object format suggested. ... DataPtr ґ pointer to image data row. ... Collections.Generic; System.Windows.Forms; Microsoft.JScript; Microsoft.JScript.Vsa; Microsoft.Vsa; } return result; // Reading script from file public static string ReadScriptFromFile( string fileName) { System.IO.StreamReader sr = new System.IO.StreamReader(fileName); string sScript = ; try { sScript = sr.ReadToEnd(); } catch (Exception ex) { //TODO } finally { sr.Close(); } } return sScript ...

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• http://imaging.cs.msu.ru/pub/2007.CyberWorlds.Yurin_Volegov.Draft.en.pdf

... Russian: ps 2 pages . Published in: Russian Math. Surveys 57 (2002), no.3. ... English: ps (gzipped) 41 pages . ... Finitely presented groups and semigroups in knot theory. Russian: ps (gzipped) tex . English: ps (gzipped) tex . ... Russian: ps (gzipped) English: ps 20 pages . arXiv.org e-Print archive: http://arXiv.org/abs/math.RA/0205042 . ... Russian: ps English: ps 11 pages . ... In this paper we introduce and study gauge-equivariant $K$-theory groups $K_\GR^i(Y)$. ...

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• Publications (Russian)
• C*-algebras: Talks

... 7ґ8, 2000 UDC 620.18:65.012.12.001/002 REPRODUCIBILITY OF THE STRUCTURE AND PROPERTIES OF PARTS AND THEIR DESCRIPTION WITHIN THE FRAMEWORK OF NONLINEAR DYNAMICS A. Yu. ... The problem of the reproducibility of complex structures is discussed from the standpoint of the applied theory of dynamic systems. ... The problem of the reproducibility of complex structures that appear in nonlinear media has become closely connected with some problems of the applied theory of dynamic systems. ...

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• http://chaos.phys.msu.ru/loskutov/PDF/Zemskov+Loskutov_EPJB_2011.pdf

MPI. ... C: #include <mpi.h> 14 MPI MPI- C (case sensitive): error = MPI_Xxxxx(parameter,.. ... Send : , , ґ Receive: , , 27 MPI () MPI - , (blocking) (non-blocking) ґ Blocking: ґ Non-blocking: , 28 MPI (modes) (Mode) Synchronous send Buffered send Standard send Ready send Receive (Completion Condition) ( ), ( ) ( ), 29 MPI ?-? () (MODE) Standard send Synchronous send Buffered send Ready send Receive MPI MPI _ Send MPI _ Ssend MPI _ Bsend MPI _ Rsend ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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• Nonparametric approaches to the description of EEG piecewise stationary
• Analysis of change-point synchronization in multi-channel EEG
• Change-point synchronization between signals or signal components

... Data . ... Services . ... Solar energetic particles . ... N -d SW Conditions : Time profiles of the key geomagnetic ( Ap and Dst indices), solar wind (velocity V , density n and temperature T ) and IMF ( B , Bx , By , Bz in GSM) parameters observed in the N day vicinity of the geomagnetic disturbed day. N -d Map of Solar Events : Map of solar surface events occurred within N day vicinity of the moment when the solar wind expansion (which causes the geomagnetic event) started. ... WIND . ...

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begin{theglossary} \ item anatomy \G{invisible, internal structure which needs tools like a scalpel and/or microscope to study}{74} \ item apical meristems \G{RAM (see) and SAM (see)}{68} \ indexspace \ item bipolar plant body \G{both root and shoot systems present}{72} \ item botany \G{the scientific study of plants and plant-like organisms}{12} \ item buds \G{embryonic shoots}{72} \ indexspace \ item calciphytes \G{ plants ...

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• http://herba.msu.ru/shipunov/school/biol_154/textbook/intro_botany.glo
• http://herba.msu.ru/shipunov/school/biol_250/2010_2011/microscopy_manual.pdf

Geometric Structures in Integrable Systems Sergey Adzhiev (with Victor Vedenyapin), Entropy for generalised quantum kinetic and Liouville equations. Abstract: In his 1872 paper L. Boltzmann proved H-theorem for a class of kinetic equations. ... Abstract: P. Clarkson and M. Kruskal (1989) proposed a method for finding reductions of partial differential equations with two independent variables. ... Gennady El, Kinetic equation for a soliton gas ґ a new integrable system? ...

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• http://new.math.msu.su/department/composite/konyukh.doc