Construction of the full local similarity map for two biopolymers A. M. Leontovicha , L. I. Brodskyb and A. E. Gorbalenyac "A. N. Belozersky Institute of Physical and Chemical Biology, Moscow State University, Moscow, 119899, Russia, bGandalf Ltd., ... The first one is the alignment of two monomer sequences. The second one is the construction of the so-called "local similarity map" (dot matrix) which maps pairs of similar fragments of coinciding lengths (without insertions and deletions). ...

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