... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPsite - PF07978
• SDPsite - PF01398
• SDPsite - PF01399

S .. ... a database of structures of DNA-protein and RNA-protein complexes. ... a program for finding hydrophobic clusters in 3D structures of macromolecules . ... search of conserved hydrophobic clusters in aligned 3D structures of protein families . ... a program for analysis of multiple alignments . ... a program for automatic detection of aligned blocks in a multiple protein alignment. ... a program for detection of aligned blocks in a multiple alignment of sequences of PDB chains. ...

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• ETS_all_contacts alignment
• ETS_water_bridges
• Inquiry information || Distances

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• OUTPUT

... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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... We applied this approach to investigate mRNA secondary structures of the influenza virus. In a recent study, we investigated if mRNA structures can be associated with the coldadapted, temperature-sensitive (ca/ts) phenotype of the influenza A virus which has been used as live attenuated vaccines for decades (2). ... We identified those areas within an RNA chain where dissimilarities of RNA secondary structures at two different temperatures are particularly pronounced. ... RNA biology, 9:1266­1274. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/134.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/167.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/161.pdf

... List of solitary restriction endonucleases in complete prokaryotic genomes . List of groups of orthologous R-M systems. List of all analyzed genomes. Contains those orthologous groups that include at least one separated R-M system . R-M orthologous group ID . REs alignments . MTases alignment . Group 1 . ...

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• wLake program homepage
• Geometrical core
• SVETKA, a program for multiple sequence alignments analysis

... Faculty of Physics . M.V.Lomonosov Moscow State University . 7 (495) 939-16-82 info@physics.msu.ru . ... Contacts . ... Research Centers . ... Search Faculties Staff . Education . ... Research . ... Education research . ... 7 495 939-16-82, . ... Faculty of Physics, 2016 . ... official site . the Ministry of Education and Science . ... official site <div><img src="https://mc.yandex.ru/watch/35023620" style="position:absolute; left:-9999px;" alt="" /></div> ...

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• Физический факультет МГУ им. М. В. Ломоносова
• XIV Symposium on Atomic, cluster, and Surface Physics

... To implement this optimization methods supeimpose and save_pdb of alignment were replaced with methods with same names of sequence. ... 9 container is iterable collection of items. 10 item is object getting markup data (new attribute). 11 . ... 32 def __init__ ( self , name , container , map_out = {}): . ... 65 def __contains__ ( self , item ): . ... 88 def from_string ( cls , string , name , container , map_out = {}): . ... 94 self = cls ( name , container , map_out ) . ... 103 def items ( self ): ...

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• allpy: 9c00d065c054 allpy/markup.py
• allpy: 53800c7e3458 allpy/markup.py
• allpy: 679665ecae37 allpy/sequence.py

Inorganic Supramolecular Assemblies and Zintl phases . Our group is interested in synthesis, crystal and electronic structure, and properties of solid state supramolecular and cluster compounds. ... The emphasis is made to the developing of the synthetic routes to the new phases, establishing the interrelationships between crystal and electronic structures, and revealing properties towards the new materials. Inorganic Chemistry Division . Department of Chemistry . ...

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• CLUSTERS AND EXTENDED METAL-META
• Division Colloquia - Inorganic Chemistry Division - Chemistry Department -

Home . Database of structures of nucleic acid - protein complexes . ... List of complexes . Pfam families . SCOP families . Interaction classes . ... NPIDB . ... Information on SCOP and Pfam domains detected in protein chains is presented. ... Each family has its own web page with the list of entries that include domains of the family. ... List of SCOP domains occurred in DNA-protein and RNA-protein complexes is organized in tree-like form, according to the SCOP classification. ...

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. ћ . Наши юбиляры . љљљљљљљ љљљљљљљљљ . ћ Сотрудники отдела . ћ Наша научная работа . ћ Семинар по Звездной астрономии . ћ Конференции . ћ Общий Каталог Переменных Звезд . ћ Каталог рассеянных скоплений . ћ Московская школа звездной астрономии . ћ Юбилеи сотрудников . ћ Избранные публикации . ћ Педагогическая и популяризаторская деятельность . ћ Наши интернет-ресурсы и другие полезные ресурсы . ћ Ссылки на каталоги и базы данных . ћ Фотогалерея . Присылайте Ваши вопросы и комментарии Ольге Дурлевич

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• APOD Index - Stars: Open Clusters
• APOD Index - Galaxies: Clusters of Galaxies
• APOD: 2001 June 14 - Around The Arches Cluster

Roman Sutormin rsutormin@gmail.com Professional experience 05/2013 ­ present: Lawrence Berkeley National Laboratory (Berkeley, CA, USA) Software developer Development of JSON based storage system used for keeping biological data involved in public KBase services. ... 10/2009 ­ 08/2011: Mail.Ru Group (Moscow, Russia), Software developer Support and development of data warehouse (PostgreSQL) and administration web tool (JBoss + GWT) on serverside of MMO game "Allods Online". ... 2013 Jul 1514(1):476. ...

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• http://storage.bioinf.fbb.msu.ru/~roman/Sutormin_CV_aug2013.pdf
• http://storage.bioinf.fbb.msu.ru/~roman/mol_biol_mosk_2006.pdf

... Derived datatypes . Up: Point-to-Point Communication Next: Datatype constructors Previous: Null processes . ... Instead, MPI provides mechanisms to specify more general, mixed, and noncontiguous communication buffers. ... More general communication buffers are specified by replacing the basic datatypes that have been used so far with derived datatypes that are constructed from basic datatypes using the constructors described in this section. ... A sequence of basic datatypes . ... Центры . ...

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... История кафедры . ... младших курсов . ... Уважаемые студенты 1-го, 2-го и 3-го курсов! ... Семинар кафедры проходит по пятницам в 15.20 в комн. ... а также на стендах кафедры на 2-м и 4-м этажах. Информацию о более ранних событиях см. в разделе "Жизнь кафедры" . ... 119991, Москва, Ленинские горы, д.1, стр.2, МГУ имени М.В.Ломоносова, физический факультет, кафедра фотоники и физики микроволн . ...

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BLASTCLUST - BLAST score-based single-linkage clustering. ... BLASTCLUST automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA. ... The primary input format for BLASTCLUST is a FASTA-format sequence file. ... Another type of input is a sequence hit-list previously saved by BLASTCLUST (in this case BLASTCLUST will use pre-computed HSP data instead of making de novo comparisons). ...

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• http://kodomo.fbb.msu.ru/~ramil.mintaev/projects/CLPB_ECOLI/abstract.txt
• Conservative Amino Acid Residues
• Structure Alignment

... Structure of Data . ... Catalog . ... In SAI OCL Catalog, we introduce our work on investigation of the Milky Way system of open star clusters. The main goal of our study is a search for new clusters using huge surveys. 168 new clusters have been already discovered by us using J,H,Ks data from 2MASS point source catalog. ... For 141 new clusters, we found their physical parameters using J,H,Ks data from 2MASS catalog and, for a number of clusters, our UBVRI CCD observational magnitudes. ...

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• SAI OCL Catalog Structure
• SAI OCL Catalog Publications
• SAI OCL Catalog Description

K.A. Butakov, Ph. Mountford, L.G. Kuz'mina, D.A. Lemenovskii . Polyhedron, v.15, p.489-490 (1996) . ABSTRACT . The synthesis of trinuclear Zr2Li cluster complex is realized and its structure is established. Laboratory of Coordination Organometallic Compounds

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• Moscow University Chemistry Bulletin Vol. 51, No. 5, P. 339 (2010)
• Moscow University Chemistry Bulletin Vol. 50, No. 1 (2009)
• Molecular modelling isomorphous substitutions W on Rh in crystal lattice like

... Micro Bubble and Bubble Cluster Dynamics in Ultrasound Field . ... The behavior of micro bubble cluster in an ultrasound field has non-linear futures and multiple scale structures in time and spatial. ... The bubble size is the micro-scale, the distance between bubbles is the mezzo-scale and the characteristic length in bubbly liquid, such as wave length, is the macro scale. The pressure wave phenomena in bubble cloud are simulated numerically taking micro and mezzo scale phenomena into account. ...

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• Nonlinear Acoustics of Fluids and Multi-Phase Media, Cavitation Phenomena
• Abstract

... Moscow Lomonosov State University . ... Consider an open network consisting of N nodes (stations) and V(N) cars, which circulate among the stations. The network is divided into n clusters. ... Cluster j contains d N j N stations, Е j = 1 n d N j = 1. ... Later j and v denote cluster numbers and they take values from 1 to n. The arrival process to a station of cluster j is a Poisson one with the rate l j . ... The destination station in the cluster v is chosen uniformly. ...

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